Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.2■□□□□ 0.66
PRKNO60260 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.2■□□□□ 0.66
PRKNO60260 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.2■□□□□ 0.66
PRKNO60260 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PRKNO60260 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PRKNO60260 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.2■□□□□ 0.66
PRKNO60260 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PRKNO60260 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.19■□□□□ 0.66
PRKNO60260 RARRES2P4-201ENST00000514074 484 ntBASIC19.19■□□□□ 0.66
PRKNO60260 AL162412.1-201ENST00000567129 965 ntBASIC19.19■□□□□ 0.66
PRKNO60260 AC069236.1-201ENST00000604339 616 ntBASIC19.19■□□□□ 0.66
PRKNO60260 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.19■□□□□ 0.66
PRKNO60260 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.19■□□□□ 0.66
PRKNO60260 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
PRKNO60260 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKNO60260 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.19■□□□□ 0.66
PRKNO60260 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PRKNO60260 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
PRKNO60260 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PRKNO60260 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.18■□□□□ 0.66
PRKNO60260 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PRKNO60260 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.18■□□□□ 0.66
PRKNO60260 AL138781.1-201ENST00000566567 1274 ntBASIC19.18■□□□□ 0.66
PRKNO60260 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.18■□□□□ 0.66
PRKNO60260 OR10C1-204ENST00000622521 1039 ntBASIC19.18■□□□□ 0.66
PRKNO60260 AC008694.1-202ENST00000636953 945 ntBASIC19.18■□□□□ 0.66
PRKNO60260 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKNO60260 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.17■□□□□ 0.66
PRKNO60260 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.17■□□□□ 0.66
PRKNO60260 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
PRKNO60260 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PRKNO60260 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PRKNO60260 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.17■□□□□ 0.66
PRKNO60260 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.17■□□□□ 0.66
PRKNO60260 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
PRKNO60260 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PRKNO60260 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKNO60260 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.17■□□□□ 0.66
PRKNO60260 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.17■□□□□ 0.66
PRKNO60260 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.16■□□□□ 0.66
PRKNO60260 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.16■□□□□ 0.66
PRKNO60260 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.16■□□□□ 0.66
PRKNO60260 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.16■□□□□ 0.66
PRKNO60260 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.16■□□□□ 0.66
PRKNO60260 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.16■□□□□ 0.66
PRKNO60260 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.16■□□□□ 0.66
PRKNO60260 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
PRKNO60260 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PRKNO60260 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKNO60260 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PRKNO60260 MKRN4P-201ENST00000444706 1521 ntBASIC19.15■□□□□ 0.66
PRKNO60260 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PRKNO60260 PLK5-205ENST00000642079 1969 ntBASIC19.15■□□□□ 0.66
PRKNO60260 AL512625.2-201ENST00000417533 625 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms