Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
MMP28Q9H239 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
MMP28Q9H239 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
MMP28Q9H239 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.16■□□□□ 0.5
MMP28Q9H239 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
MMP28Q9H239 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
MMP28Q9H239 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.16■□□□□ 0.5
MMP28Q9H239 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.16■□□□□ 0.5
MMP28Q9H239 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.16■□□□□ 0.5
MMP28Q9H239 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.16■□□□□ 0.5
MMP28Q9H239 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
MMP28Q9H239 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
MMP28Q9H239 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MMP28Q9H239 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.16■□□□□ 0.5
MMP28Q9H239 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.15■□□□□ 0.5
MMP28Q9H239 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 AC006128.1-201ENST00000624704 1661 ntBASIC18.15■□□□□ 0.5
MMP28Q9H239 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.15■□□□□ 0.5
MMP28Q9H239 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.15■□□□□ 0.5
MMP28Q9H239 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
MMP28Q9H239 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MMP28Q9H239 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MMP28Q9H239 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MMP28Q9H239 AP000974.1-201ENST00000623909 2387 ntBASIC18.15■□□□□ 0.5
MMP28Q9H239 AC027702.1-201ENST00000563810 1770 ntBASIC18.14■□□□□ 0.5
MMP28Q9H239 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.14■□□□□ 0.5
MMP28Q9H239 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
MMP28Q9H239 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
MMP28Q9H239 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
MMP28Q9H239 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.14■□□□□ 0.49
MMP28Q9H239 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
MMP28Q9H239 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.14■□□□□ 0.49
MMP28Q9H239 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.14■□□□□ 0.49
MMP28Q9H239 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MMP28Q9H239 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.14■□□□□ 0.49
MMP28Q9H239 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
MMP28Q9H239 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
MMP28Q9H239 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.13■□□□□ 0.49
MMP28Q9H239 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.13■□□□□ 0.49
MMP28Q9H239 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.13■□□□□ 0.49
MMP28Q9H239 AC092171.4-201ENST00000609130 632 ntBASIC18.13■□□□□ 0.49
MMP28Q9H239 AC009086.3-201ENST00000623486 1008 ntBASIC18.13■□□□□ 0.49
MMP28Q9H239 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.13■□□□□ 0.49
MMP28Q9H239 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.13■□□□□ 0.49
MMP28Q9H239 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.13■□□□□ 0.49
MMP28Q9H239 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.13■□□□□ 0.49
MMP28Q9H239 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MMP28Q9H239 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MMP28Q9H239 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.12■□□□□ 0.49
MMP28Q9H239 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.12■□□□□ 0.49
MMP28Q9H239 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms