Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 HLA-B-256ENST00000639848 1089 ntBASIC20.2■□□□□ 0.82
LMX1AQ8TE12 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 GCSHP5-201ENST00000443090 522 ntBASIC20.19■□□□□ 0.82
LMX1AQ8TE12 AC142381.4-202ENST00000563973 229 ntBASIC20.19■□□□□ 0.82
LMX1AQ8TE12 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1AQ8TE12 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 AC073648.6-201ENST00000641589 218 ntBASIC20.18■□□□□ 0.82
LMX1AQ8TE12 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LMX1AQ8TE12 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.17■□□□□ 0.82
LMX1AQ8TE12 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LMX1AQ8TE12 AC092368.3-202ENST00000574180 1591 ntBASIC20.17■□□□□ 0.82
LMX1AQ8TE12 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 AP006294.2-201ENST00000641667 209 ntBASIC20.16■□□□□ 0.82
LMX1AQ8TE12 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LMX1AQ8TE12 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.15■□□□□ 0.82
LMX1AQ8TE12 PNMA6B-201ENST00000538162 1200 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms