Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP005212.1-201ENST00000581547 1997 ntBASIC15.72■□□□□ 0.11
HLA-DMBP28068 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HLA-DMBP28068 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HLA-DMBP28068 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HLA-DMBP28068 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC15.72■□□□□ 0.11
HLA-DMBP28068 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC15.72■□□□□ 0.11
HLA-DMBP28068 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
HLA-DMBP28068 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HLA-DMBP28068 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
HLA-DMBP28068 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 AK1-201ENST00000223836 736 ntTSL 3 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 AC097381.1-201ENST00000429019 1296 ntBASIC15.71■□□□□ 0.11
HLA-DMBP28068 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HLA-DMBP28068 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC15.71■□□□□ 0.11
HLA-DMBP28068 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
HLA-DMBP28068 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HLA-DMBP28068 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HLA-DMBP28068 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 AC061975.6-201ENST00000579045 1553 ntBASIC15.7■□□□□ 0.1
HLA-DMBP28068 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 AC027702.1-201ENST00000563810 1770 ntBASIC15.7■□□□□ 0.1
HLA-DMBP28068 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 MIR6084-201ENST00000622012 110 ntBASIC15.7■□□□□ 0.1
HLA-DMBP28068 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.7■□□□□ 0.1
HLA-DMBP28068 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DMBP28068 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 AC012414.1-201ENST00000556676 535 ntBASIC15.69■□□□□ 0.1
HLA-DMBP28068 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 AC087623.3-201ENST00000607047 1098 ntBASIC15.69■□□□□ 0.1
HLA-DMBP28068 SP2-202ENST00000613139 908 ntTSL 5 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 GABARAPL3-202ENST00000624044 1851 ntBASIC15.69■□□□□ 0.1
HLA-DMBP28068 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HLA-DMBP28068 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DMBP28068 MPST-204ENST00000404393 1329 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
HLA-DMBP28068 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DMBP28068 NT5C3AP1-201ENST00000394500 1012 ntBASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms