Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
RAPGEF3O95398 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
RAPGEF3O95398 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RAPGEF3O95398 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RAPGEF3O95398 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 AC139530.1-201ENST00000575312 1977 ntBASIC31.43■■■□□ 2.62
RAPGEF3O95398 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 PTPA-214ENST00000423100 988 ntTSL 2 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
RAPGEF3O95398 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
RAPGEF3O95398 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RAPGEF3O95398 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RAPGEF3O95398 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC31.42■■■□□ 2.62
RAPGEF3O95398 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC31.42■■■□□ 2.62
RAPGEF3O95398 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
RAPGEF3O95398 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC31.42■■■□□ 2.62
RAPGEF3O95398 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
RAPGEF3O95398 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RAPGEF3O95398 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
RAPGEF3O95398 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
RAPGEF3O95398 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC31.41■■■□□ 2.62
RAPGEF3O95398 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
RAPGEF3O95398 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC31.41■■■□□ 2.62
RAPGEF3O95398 NME3-204ENST00000563498 920 ntTSL 2 BASIC31.41■■■□□ 2.62
RAPGEF3O95398 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC31.41■■■□□ 2.62
RAPGEF3O95398 KRT8P9-201ENST00000558927 1449 ntBASIC31.41■■■□□ 2.62
RAPGEF3O95398 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
RAPGEF3O95398 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RAPGEF3O95398 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RAPGEF3O95398 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
RAPGEF3O95398 SERP1-205ENST00000487153 657 ntTSL 4 BASIC31.4■■■□□ 2.62
RAPGEF3O95398 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC31.4■■■□□ 2.62
RAPGEF3O95398 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC31.4■■■□□ 2.62
RAPGEF3O95398 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
RAPGEF3O95398 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RAPGEF3O95398 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RAPGEF3O95398 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RAPGEF3O95398 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RAPGEF3O95398 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RAPGEF3O95398 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
RAPGEF3O95398 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC31.39■■■□□ 2.62
RAPGEF3O95398 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC31.39■■■□□ 2.62
RAPGEF3O95398 AC005829.2-201ENST00000571422 1056 ntBASIC31.39■■■□□ 2.62
RAPGEF3O95398 AC005363.2-201ENST00000618631 242 ntBASIC31.39■■■□□ 2.62
RAPGEF3O95398 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC31.39■■■□□ 2.62
RAPGEF3O95398 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RAPGEF3O95398 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.39■■■□□ 2.61
RAPGEF3O95398 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC31.39■■■□□ 2.61
RAPGEF3O95398 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
RAPGEF3O95398 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
RAPGEF3O95398 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC31.38■■■□□ 2.61
RAPGEF3O95398 AC087633.2-202ENST00000565166 1439 ntBASIC31.38■■■□□ 2.61
RAPGEF3O95398 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC31.38■■■□□ 2.61
RAPGEF3O95398 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
RAPGEF3O95398 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
RAPGEF3O95398 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RAPGEF3O95398 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
RAPGEF3O95398 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC31.37■■■□□ 2.61
RAPGEF3O95398 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC31.37■■■□□ 2.61
RAPGEF3O95398 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RAPGEF3O95398 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC31.37■■■□□ 2.61
RAPGEF3O95398 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
RAPGEF3O95398 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
RAPGEF3O95398 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
RAPGEF3O95398 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
RAPGEF3O95398 CRAT-202ENST00000393384 973 ntTSL 2 BASIC31.36■■■□□ 2.61
RAPGEF3O95398 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC31.36■■■□□ 2.61
RAPGEF3O95398 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
RAPGEF3O95398 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RAPGEF3O95398 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 LTK-203ENST00000453182 2412 ntTSL 2 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 KRT18P57-201ENST00000443599 1254 ntBASIC31.35■■■□□ 2.61
RAPGEF3O95398 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RAPGEF3O95398 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RAPGEF3O95398 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 BRWD1-AS2-201ENST00000603064 1028 ntBASIC31.35■■■□□ 2.61
RAPGEF3O95398 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 NFE2L3P1-201ENST00000588207 1959 ntBASIC31.35■■■□□ 2.61
RAPGEF3O95398 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
RAPGEF3O95398 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
RAPGEF3O95398 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
RAPGEF3O95398 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC31.34■■■□□ 2.61
RAPGEF3O95398 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC31.34■■■□□ 2.61
RAPGEF3O95398 AL355355.2-201ENST00000442321 338 ntBASIC31.34■■■□□ 2.61
RAPGEF3O95398 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC31.34■■■□□ 2.61
RAPGEF3O95398 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC31.34■■■□□ 2.61
RAPGEF3O95398 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC31.34■■■□□ 2.61
RAPGEF3O95398 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
RAPGEF3O95398 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC31.34■■■□□ 2.61
RAPGEF3O95398 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
RAPGEF3O95398 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
RAPGEF3O95398 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms