Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.16■□□□□ 0.98
CBX4O00257 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CBX4O00257 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.15■□□□□ 0.98
CBX4O00257 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.15■□□□□ 0.98
CBX4O00257 CDV3P1-201ENST00000471403 739 ntBASIC21.15■□□□□ 0.98
CBX4O00257 AF201337.1-201ENST00000520239 748 ntBASIC21.15■□□□□ 0.98
CBX4O00257 AL162412.1-201ENST00000567129 965 ntBASIC21.15■□□□□ 0.98
CBX4O00257 AC105036.2-201ENST00000569468 176 ntBASIC21.15■□□□□ 0.98
CBX4O00257 AC133552.2-202ENST00000575694 574 ntBASIC21.15■□□□□ 0.98
CBX4O00257 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CBX4O00257 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CBX4O00257 FEM1AP4-201ENST00000443167 1987 ntBASIC21.14■□□□□ 0.98
CBX4O00257 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CBX4O00257 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.14■□□□□ 0.98
CBX4O00257 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.14■□□□□ 0.97
CBX4O00257 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CBX4O00257 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.14■□□□□ 0.97
CBX4O00257 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CBX4O00257 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CBX4O00257 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CBX4O00257 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.14■□□□□ 0.97
CBX4O00257 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.14■□□□□ 0.97
CBX4O00257 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CBX4O00257 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CBX4O00257 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.14■□□□□ 0.97
CBX4O00257 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.14■□□□□ 0.97
CBX4O00257 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CBX4O00257 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.14■□□□□ 0.97
CBX4O00257 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CBX4O00257 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CBX4O00257 AC026310.3-201ENST00000625186 2373 ntBASIC21.14■□□□□ 0.97
CBX4O00257 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CBX4O00257 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.13■□□□□ 0.97
CBX4O00257 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.13■□□□□ 0.97
CBX4O00257 AF106564.1-201ENST00000607058 2553 ntBASIC21.13■□□□□ 0.97
CBX4O00257 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.13■□□□□ 0.97
CBX4O00257 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CBX4O00257 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CBX4O00257 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CBX4O00257 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.13■□□□□ 0.97
CBX4O00257 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 OR10C1-204ENST00000622521 1039 ntBASIC21.13■□□□□ 0.97
CBX4O00257 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CBX4O00257 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CBX4O00257 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CBX4O00257 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CBX4O00257 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.12■□□□□ 0.97
CBX4O00257 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CBX4O00257 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CBX4O00257 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CBX4O00257 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CBX4O00257 RARRES2P4-201ENST00000514074 484 ntBASIC21.12■□□□□ 0.97
CBX4O00257 CD99P1-205ENST00000527459 561 ntBASIC21.12■□□□□ 0.97
CBX4O00257 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.12■□□□□ 0.97
CBX4O00257 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.11■□□□□ 0.97
CBX4O00257 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CBX4O00257 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.11■□□□□ 0.97
CBX4O00257 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CBX4O00257 AC116050.2-201ENST00000612102 1779 ntBASIC21.11■□□□□ 0.97
CBX4O00257 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
CBX4O00257 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CBX4O00257 AC007322.3-201ENST00000426526 701 ntBASIC21.11■□□□□ 0.97
CBX4O00257 AC093787.1-201ENST00000450396 207 ntBASIC21.11■□□□□ 0.97
CBX4O00257 TSPY20P-201ENST00000450910 630 ntBASIC21.11■□□□□ 0.97
CBX4O00257 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.11■□□□□ 0.97
CBX4O00257 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.11■□□□□ 0.97
CBX4O00257 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.11■□□□□ 0.97
CBX4O00257 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.11■□□□□ 0.97
CBX4O00257 TMEM191A-211ENST00000637163 1067 ntBASIC21.11■□□□□ 0.97
CBX4O00257 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CBX4O00257 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CBX4O00257 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.11■□□□□ 0.97
CBX4O00257 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CBX4O00257 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CBX4O00257 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CBX4O00257 AL049796.1-201ENST00000565336 1766 ntBASIC21.1■□□□□ 0.97
CBX4O00257 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CBX4O00257 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.1■□□□□ 0.97
CBX4O00257 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.1■□□□□ 0.97
CBX4O00257 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.1■□□□□ 0.97
CBX4O00257 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CBX4O00257 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CBX4O00257 TSPY6P-201ENST00000448518 926 ntBASIC21.1■□□□□ 0.97
CBX4O00257 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms