Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 AC092667.1-201ENST00000434301 2586 ntBASIC21.41■■□□□ 1.02
PCDH9Q9HC56 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 KRT87P-202ENST00000534226 1464 ntBASIC21.4■■□□□ 1.02
PCDH9Q9HC56 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 AC034268.1-201ENST00000441047 882 ntBASIC21.4■■□□□ 1.02
PCDH9Q9HC56 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDH9Q9HC56 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.39■■□□□ 1.02
PCDH9Q9HC56 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDH9Q9HC56 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDH9Q9HC56 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PCDH9Q9HC56 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
PCDH9Q9HC56 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PCDH9Q9HC56 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDH9Q9HC56 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 EEF1DP3-203ENST00000566025 782 ntBASIC21.37■■□□□ 1.01
PCDH9Q9HC56 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDH9Q9HC56 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.36■■□□□ 1.01
PCDH9Q9HC56 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms