Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 FAM99A-202ENST00000538190 1989 ntBASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 MCRIP2P1-201ENST00000394346 511 ntBASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 RN7SL471P-201ENST00000580476 299 ntBASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 AC233702.5-201ENST00000584107 538 ntBASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 FAM21FP-204ENST00000608637 956 ntBASIC25.6■■□□□ 1.69
CCDC88AQ3V6T2 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 KRT18P35-201ENST00000510488 1269 ntBASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 AC124016.1-201ENST00000609552 612 ntBASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC88AQ3V6T2 AC007322.3-201ENST00000426526 701 ntBASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC88AQ3V6T2 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC88AQ3V6T2 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
CCDC88AQ3V6T2 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC88AQ3V6T2 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC88AQ3V6T2 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms