Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.25■□□□□ 0.67
RFX4Q33E94 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.25■□□□□ 0.67
RFX4Q33E94 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.24■□□□□ 0.67
RFX4Q33E94 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
RFX4Q33E94 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.24■□□□□ 0.67
RFX4Q33E94 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.24■□□□□ 0.67
RFX4Q33E94 MIR4466-201ENST00000606121 54 ntBASIC19.24■□□□□ 0.67
RFX4Q33E94 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.24■□□□□ 0.67
RFX4Q33E94 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RFX4Q33E94 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RFX4Q33E94 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RFX4Q33E94 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RFX4Q33E94 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RFX4Q33E94 AP004607.7-201ENST00000527152 1677 ntBASIC19.24■□□□□ 0.67
RFX4Q33E94 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX4Q33E94 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
RFX4Q33E94 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
RFX4Q33E94 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.23■□□□□ 0.67
RFX4Q33E94 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.23■□□□□ 0.67
RFX4Q33E94 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 AC011298.3-201ENST00000615796 283 ntBASIC19.23■□□□□ 0.67
RFX4Q33E94 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.23■□□□□ 0.67
RFX4Q33E94 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.23■□□□□ 0.67
RFX4Q33E94 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
RFX4Q33E94 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX4Q33E94 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RFX4Q33E94 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.22■□□□□ 0.67
RFX4Q33E94 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX4Q33E94 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.22■□□□□ 0.67
RFX4Q33E94 AL162377.1-201ENST00000618844 1793 ntBASIC19.22■□□□□ 0.67
RFX4Q33E94 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFX4Q33E94 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFX4Q33E94 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFX4Q33E94 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.22■□□□□ 0.67
RFX4Q33E94 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 PCDHAC2-203ENST00000615316 3011 ntBASIC19.22■□□□□ 0.67
RFX4Q33E94 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.22■□□□□ 0.67
RFX4Q33E94 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RFX4Q33E94 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX4Q33E94 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX4Q33E94 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX4Q33E94 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.21■□□□□ 0.67
RFX4Q33E94 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RFX4Q33E94 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.21■□□□□ 0.67
RFX4Q33E94 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RFX4Q33E94 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.21■□□□□ 0.67
RFX4Q33E94 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 SLC47A1P1-202ENST00000449666 945 ntBASIC19.21■□□□□ 0.67
RFX4Q33E94 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.21■□□□□ 0.67
RFX4Q33E94 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.21■□□□□ 0.67
RFX4Q33E94 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.21■□□□□ 0.67
RFX4Q33E94 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RFX4Q33E94 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFX4Q33E94 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.21■□□□□ 0.67
RFX4Q33E94 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms