Protein–RNA interactions for Protein: P0CG48

UBC, Polyubiquitin-C, humanhuman

Known RBP Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBCP0CG48 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
UBCP0CG48 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
UBCP0CG48 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
UBCP0CG48 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.5
UBCP0CG48 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
UBCP0CG48 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
UBCP0CG48 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
UBCP0CG48 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
UBCP0CG48 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.14■□□□□ 0.49
UBCP0CG48 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
UBCP0CG48 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
UBCP0CG48 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.14■□□□□ 0.49
UBCP0CG48 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.14■□□□□ 0.49
UBCP0CG48 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
UBCP0CG48 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
UBCP0CG48 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
UBCP0CG48 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.14■□□□□ 0.49
UBCP0CG48 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.14■□□□□ 0.49
UBCP0CG48 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
UBCP0CG48 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.13■□□□□ 0.49
UBCP0CG48 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.13■□□□□ 0.49
UBCP0CG48 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
UBCP0CG48 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.13■□□□□ 0.49
UBCP0CG48 AC131212.1-201ENST00000613771 668 ntBASIC18.13■□□□□ 0.49
UBCP0CG48 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.13■□□□□ 0.49
UBCP0CG48 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
UBCP0CG48 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
UBCP0CG48 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.12■□□□□ 0.49
UBCP0CG48 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
UBCP0CG48 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
UBCP0CG48 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 MIR572-201ENST00000384983 95 ntBASIC18.12■□□□□ 0.49
UBCP0CG48 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.12■□□□□ 0.49
UBCP0CG48 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.12■□□□□ 0.49
UBCP0CG48 AC073314.1-201ENST00000568729 2216 ntBASIC18.12■□□□□ 0.49
UBCP0CG48 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 AL391422.3-201ENST00000603791 2761 ntBASIC18.12■□□□□ 0.49
UBCP0CG48 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
UBCP0CG48 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBCP0CG48 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
UBCP0CG48 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
UBCP0CG48 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 EDA-201ENST00000338901 1233 ntBASIC18.11■□□□□ 0.49
UBCP0CG48 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.11■□□□□ 0.49
UBCP0CG48 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.11■□□□□ 0.49
UBCP0CG48 PBX2P1-201ENST00000493219 1291 ntBASIC18.11■□□□□ 0.49
UBCP0CG48 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
UBCP0CG48 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.11■□□□□ 0.49
UBCP0CG48 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
UBCP0CG48 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.11■□□□□ 0.49
UBCP0CG48 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
UBCP0CG48 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
UBCP0CG48 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBCP0CG48 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
UBCP0CG48 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
UBCP0CG48 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
UBCP0CG48 AC007225.1-201ENST00000566331 1836 ntBASIC18.1■□□□□ 0.49
UBCP0CG48 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
UBCP0CG48 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.1■□□□□ 0.49
UBCP0CG48 AC008406.3-201ENST00000620001 1374 ntBASIC18.1■□□□□ 0.49
UBCP0CG48 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBCP0CG48 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.1■□□□□ 0.49
UBCP0CG48 AC096631.2-201ENST00000436136 790 ntBASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms