Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.3□□□□□ -0.282e-8■□□□□ 8.2
CDC40O60508 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC13.13□□□□□ -0.312e-8■□□□□ 8.2
CDC40O60508 SLC17A9-203ENST00000411611 565 ntTSL 212.94□□□□□ -0.341e-6■□□□□ 8.2
CDC40O60508 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.342e-8■□□□□ 8.2
CDC40O60508 RNF4-208ENST00000507247 616 ntTSL 1 (best)12.9□□□□□ -0.341e-6■□□□□ 8.2
CDC40O60508 RNF4-202ENST00000502316 855 ntTSL 212.87□□□□□ -0.351e-6■□□□□ 8.2
CDC40O60508 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.381e-6■□□□□ 8.2
CDC40O60508 RNF4-215ENST00000511843 586 ntTSL 512.28□□□□□ -0.441e-6■□□□□ 8.2
CDC40O60508 RNF4-201ENST00000314289 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.61e-6■□□□□ 8.2
CDC40O60508 RNF4-222ENST00000541204 2796 ntTSL 1 (best) BASIC11.27□□□□□ -0.611e-6■□□□□ 8.2
CDC40O60508 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC10.88□□□□□ -0.671e-6■□□□□ 8.2
CDC40O60508 U2SURP-215ENST00000493782 588 ntTSL 1 (best)10.86□□□□□ -0.671e-6■□□□□ 8.2
CDC40O60508 RNF4-218ENST00000513284 517 ntTSL 410.49□□□□□ -0.731e-6■□□□□ 8.2
CDC40O60508 RNF4-212ENST00000509258 893 ntTSL 1 (best) BASIC10.1□□□□□ -0.791e-6■□□□□ 8.2
CDC40O60508 HPRT1-201ENST00000298556 1407 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.851e-6■□□□□ 8.2
CDC40O60508 EML4-202ENST00000401738 3797 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.855e-11■□□□□ 8.2
CDC40O60508 RNF4-221ENST00000513643 516 ntTSL 38.85□□□□□ -0.991e-6■□□□□ 8.2
CDC40O60508 ROBO1-204ENST00000467549 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -12e-8■□□□□ 8.2
CDC40O60508 TNS1-202ENST00000310858 1792 ntTSL 1 (best) BASIC8.19□□□□□ -1.11e-6■□□□□ 8.2
CDC40O60508 RER1-205ENST00000443438 540 ntTSL 27.78□□□□□ -1.161e-6■□□□□ 8.2
CDC40O60508 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.252e-8■□□□□ 8.2
CDC40O60508 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.351e-6■□□□□ 8.2
CDC40O60508 U2SURP-211ENST00000488497 3557 ntTSL 1 (best)6.07□□□□□ -1.441e-6■□□□□ 8.2
CDC40O60508 EML4-204ENST00000406175 4622 ntTSL 1 (best)5.8□□□□□ -1.485e-11■□□□□ 8.2
CDC40O60508 HPRT1-203ENST00000475720 599 ntTSL 34.6□□□□□ -1.671e-6■□□□□ 8.2
CDC40O60508 HNRNPUL2-202ENST00000540127 439 ntTSL 34.23□□□□□ -1.731e-6■□□□□ 8.2
CDC40O60508 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.731e-6■□□□□ 8.2
CDC40O60508 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.97□□□□□ -1.771e-6■□□□□ 8.2
CDC40O60508 EML4-207ENST00000480320 1932 ntTSL 23.42□□□□□ -1.865e-11■□□□□ 8.2
CDC40O60508 U2SURP-204ENST00000465175 571 ntTSL 43.34□□□□□ -1.871e-6■□□□□ 8.2
CDC40O60508 U2SURP-217ENST00000600150 725 ntTSL 53.34□□□□□ -1.871e-6■□□□□ 8.2
CDC40O60508 U2SURP-210ENST00000485374 470 ntTSL 42.82□□□□□ -1.961e-6■□□□□ 8.2
CDC40O60508 U2SURP-206ENST00000470400 881 ntTSL 32.64□□□□□ -1.991e-6■□□□□ 8.2
CDC40O60508 U2SURP-201ENST00000461591 1580 ntTSL 22.53□□□□□ -21e-6■□□□□ 8.2
CDC40O60508 U2SURP-213ENST00000491827 824 ntTSL 32.37□□□□□ -2.031e-6■□□□□ 8.2
CDC40O60508 U2SURP-203ENST00000463563 4364 ntTSL 22.32□□□□□ -2.041e-6■□□□□ 8.2
CDC40O60508 RPS6KA3-203ENST00000457145 804 ntTSL 22.19□□□□□ -2.061e-6■□□□□ 8.2
CDC40O60508 EIF4A2-223ENST00000494445 629 ntTSL 28.38□□□□□ -1.075e-7■□□□□ 8.2
CDC40O60508 EIF4A2-225ENST00000496382 460 ntTSL 1 (best)5.7□□□□□ -1.55e-7■□□□□ 8.2
CDC40O60508 EIF4A2-222ENST00000492144 993 ntTSL 24.83□□□□□ -1.645e-7■□□□□ 8.2
CDC40O60508 EIF4A2-226ENST00000497177 849 ntTSL 54.78□□□□□ -1.645e-7■□□□□ 8.2
CDC40O60508 EIF4A2-216ENST00000468362 1356 ntTSL 24.4□□□□□ -1.715e-7■□□□□ 8.2
CDC40O60508 EIF4A2-209ENST00000461021 575 ntTSL 24.08□□□□□ -1.765e-7■□□□□ 8.2
CDC40O60508 RSRP1-222ENST00000570063 1821 ntTSL 516.19■□□□□ 0.181e-9■□□□□ 8.1
CDC40O60508 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.051e-9■□□□□ 8.1
CDC40O60508 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.091e-9■□□□□ 8.1
CDC40O60508 RSRP1-217ENST00000568254 2013 ntTSL 1 (best)14.19□□□□□ -0.141e-9■□□□□ 8.1
CDC40O60508 RSRP1-212ENST00000565733 772 ntTSL 313.14□□□□□ -0.311e-9■□□□□ 8.1
CDC40O60508 RSRP1-216ENST00000568212 570 ntTSL 412.79□□□□□ -0.361e-9■□□□□ 8.1
CDC40O60508 RSRP1-204ENST00000473314 3034 ntTSL 212.69□□□□□ -0.381e-9■□□□□ 8.1
CDC40O60508 RSRP1-207ENST00000498238 2941 ntTSL 211.33□□□□□ -0.61e-9■□□□□ 8.1
CDC40O60508 RSRP1-205ENST00000475766 525 ntTSL 410.48□□□□□ -0.731e-9■□□□□ 8.1
CDC40O60508 RSRP1-206ENST00000491378 487 ntTSL 35.91□□□□□ -1.461e-9■□□□□ 8.1
CDC40O60508 RSRP1-213ENST00000566395 824 ntTSL 34.52□□□□□ -1.691e-9■□□□□ 8.1
CDC40O60508 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.27■□□□□ 0.844e-7■□□□□ 8.1
CDC40O60508 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.089e-11■□□□□ 8.1
CDC40O60508 CDK8-205ENST00000536792 3032 ntTSL 1 (best)14.4□□□□□ -0.19e-11■□□□□ 8.1
CDC40O60508 NPC1L1-204ENST00000546276 4826 ntTSL 1 (best) BASIC11.57□□□□□ -0.563e-8■□□□□ 8
CDC40O60508 NPC1L1-201ENST00000289547 5048 ntTSL 1 (best) BASIC10.88□□□□□ -0.673e-8■□□□□ 8
CDC40O60508 NPC1L1-202ENST00000381160 4141 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.783e-8■□□□□ 8
CDC40O60508 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.435e-13■□□□□ 8
CDC40O60508 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.265e-13■□□□□ 8
CDC40O60508 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.63□□□□□ -0.075e-13■□□□□ 8
CDC40O60508 SERPINF2-205ENST00000453723 838 ntTSL 313.66□□□□□ -0.225e-13■□□□□ 8
Retrieved 64 of 5,364 protein–RNA pairs in 23.5 ms