RNA–Protein interactions for RNA: ENST00000546276.5

NPC1L1-204, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 4,826 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-204ENST00000546276 NISCHQ9Y2I1 1504 aa20.86■□□□□ 0.93
NPC1L1-204ENST00000546276 DCAF8L2P0C7V8 631 aa20.6■□□□□ 0.89
NPC1L1-204ENST00000546276 SUPT5HO00267 1087 aaKnown RBP20.25■□□□□ 0.83
NPC1L1-204ENST00000546276 SHROOM4Q9ULL8 1493 aa19.92■□□□□ 0.78
NPC1L1-204ENST00000546276 PCGF6Q9BYE7 350 aa19.34■□□□□ 0.69
NPC1L1-204ENST00000546276 EHMT2Q96KQ7 1210 aa19.29■□□□□ 0.68
NPC1L1-204ENST00000546276 PELP1Q8IZL8 1130 aaKnown RBP19.09■□□□□ 0.65
NPC1L1-204ENST00000546276 ZEB1P37275 1124 aaPredicted RBP19■□□□□ 0.63
NPC1L1-204ENST00000546276 FAM9AQ8IZU1 332 aaPredicted RBP18.99■□□□□ 0.63
NPC1L1-204ENST00000546276 APLP2Q06481 763 aa18.86■□□□□ 0.61
NPC1L1-204ENST00000546276 CENPBP07199 599 aaPredicted RBP18.82■□□□□ 0.6
NPC1L1-204ENST00000546276 HRCP23327 699 aa18.77■□□□□ 0.59
NPC1L1-204ENST00000546276 TRIM41Q8WV44 630 aa18.77■□□□□ 0.59
NPC1L1-204ENST00000546276 TTBK1Q5TCY1 1321 aaPredicted RBP18.73■□□□□ 0.59
NPC1L1-204ENST00000546276 CCER1Q8TC90 406 aaPredicted RBP18.71■□□□□ 0.59
NPC1L1-204ENST00000546276 TRIM26Q12899 539 aaPredicted RBP18.6■□□□□ 0.57
NPC1L1-204ENST00000546276 CHIC1Q5VXU3 224 aa18.5■□□□□ 0.55
NPC1L1-204ENST00000546276 MYT1Q01538 1121 aa18.48■□□□□ 0.55
NPC1L1-204ENST00000546276 LOC105371045A0A1W2PR82 267 aa18.35■□□□□ 0.53
NPC1L1-204ENST00000546276 UBTFP17480 764 aaKnown RBP18.35■□□□□ 0.53
NPC1L1-204ENST00000546276 YTHDC1Q96MU7 727 aaKnown RBP18.33■□□□□ 0.52
NPC1L1-204ENST00000546276 RANGAP1P46060 587 aaPredicted RBP18.32■□□□□ 0.52
NPC1L1-204ENST00000546276 PPARGC1BQ86YN6 1023 aaKnown RBP18.31■□□□□ 0.52
NPC1L1-204ENST00000546276 ERICH6Q7L0X2 663 aa18.25■□□□□ 0.51
NPC1L1-204ENST00000546276 NEFLP07196 543 aa18.13■□□□□ 0.49
NPC1L1-204ENST00000546276 ATP1B4Q9UN42 357 aaPredicted RBP18.01■□□□□ 0.47
NPC1L1-204ENST00000546276 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.93■□□□□ 0.46
NPC1L1-204ENST00000546276 DIEXFQ68CQ4 756 aaKnown RBP17.92■□□□□ 0.46
NPC1L1-204ENST00000546276 HNRNPUL2Q1KMD3 747 aaKnown RBP17.87■□□□□ 0.45
NPC1L1-204ENST00000546276 ITGAEP38570 1179 aa17.74■□□□□ 0.43
NPC1L1-204ENST00000546276 GTF3C3Q9Y5Q9 886 aa17.71■□□□□ 0.43
NPC1L1-204ENST00000546276 DCAF1Q9Y4B6 1507 aa17.58■□□□□ 0.41
NPC1L1-204ENST00000546276 ACIN1Q9UKV3 1341 aaKnown RBP17.58■□□□□ 0.41
NPC1L1-204ENST00000546276 ZNF316A6NFI3 1004 aaPredicted RBP17.53■□□□□ 0.4
NPC1L1-204ENST00000546276 ABCC9O60706 1549 aa17.49■□□□□ 0.39
NPC1L1-204ENST00000546276 ZCCHC6Q5VYS8 1495 aaKnown RBP17.41■□□□□ 0.38
NPC1L1-204ENST00000546276 POLR3GLQ9BT43 218 aa17.41■□□□□ 0.38
NPC1L1-204ENST00000546276 DAXXQ9UER7 740 aaPredicted RBP17.38■□□□□ 0.37
NPC1L1-204ENST00000546276 BCANQ96GW7 911 aa17.33■□□□□ 0.37
NPC1L1-204ENST00000546276 FAM50AQ14320 339 aaKnown RBP17.33■□□□□ 0.36
NPC1L1-204ENST00000546276 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
NPC1L1-204ENST00000546276 CNGB1Q14028 1251 aaPredicted RBP17.28■□□□□ 0.36
NPC1L1-204ENST00000546276 CSRNP3Q8WYN3 585 aa17.27■□□□□ 0.36
NPC1L1-204ENST00000546276 MYO15BQ96JP2 1530 aa17.27■□□□□ 0.35
NPC1L1-204ENST00000546276 RTL5Q5HYW3 569 aaPredicted RBP17.26■□□□□ 0.35
NPC1L1-204ENST00000546276 ANP32CO43423 234 aa17.25■□□□□ 0.35
NPC1L1-204ENST00000546276 SCAF1Q9H7N4 1312 aaKnown RBP17.23■□□□□ 0.35
NPC1L1-204ENST00000546276 CLSPNQ9HAW4 1339 aa17.19■□□□□ 0.34
NPC1L1-204ENST00000546276 CDK11AQ9UQ88 783 aaPredicted RBP17.18■□□□□ 0.34
NPC1L1-204ENST00000546276 PABPN1Q86U42 306 aaKnown RBP eCLIP17.14■□□□□ 0.34
NPC1L1-204ENST00000546276 TRIM52Q96A61 297 aa17.13■□□□□ 0.33
NPC1L1-204ENST00000546276 SCRIBQ14160 1630 aa17.04■□□□□ 0.32
NPC1L1-204ENST00000546276 CCDC180Q9P1Z9 1646 aa17.04■□□□□ 0.32
NPC1L1-204ENST00000546276 FKBP8Q14318 412 aa16.98■□□□□ 0.31
NPC1L1-204ENST00000546276 MYT1LQ9UL68 1186 aa16.97■□□□□ 0.31
NPC1L1-204ENST00000546276 MIER1Q8N108 512 aa16.95■□□□□ 0.3
NPC1L1-204ENST00000546276 ZNF326Q5BKZ1 582 aaKnown RBP16.9■□□□□ 0.3
NPC1L1-204ENST00000546276 DDX10Q13206 875 aaKnown RBP16.87■□□□□ 0.29
NPC1L1-204ENST00000546276 P3H3Q8IVL6 736 aa16.87■□□□□ 0.29
NPC1L1-204ENST00000546276 ANP32AP39687 249 aaKnown RBP16.85■□□□□ 0.29
NPC1L1-204ENST00000546276 RSF1Q96T23 1441 aaPredicted RBP16.84■□□□□ 0.29
NPC1L1-204ENST00000546276 TONSLQ96HA7 1378 aa16.83■□□□□ 0.28
NPC1L1-204ENST00000546276 SLC4A1APQ9BWU0 796 aaKnown RBP16.82■□□□□ 0.28
NPC1L1-204ENST00000546276 HNRNPUQ00839 825 aaKnown RBP eCLIP16.8■□□□□ 0.28
NPC1L1-204ENST00000546276 CEP162Q5TB80 1403 aa16.78■□□□□ 0.28
NPC1L1-204ENST00000546276 CLIP1P30622 1438 aa16.77■□□□□ 0.28
NPC1L1-204ENST00000546276 EEA1Q15075 1411 aa16.74■□□□□ 0.27
NPC1L1-204ENST00000546276 GOLGA3Q08378 1498 aa16.7■□□□□ 0.26
NPC1L1-204ENST00000546276 NPM2Q86SE8 214 aaKnown RBP16.68■□□□□ 0.26
NPC1L1-204ENST00000546276 FAM9BQ8IZU0 186 aa16.67■□□□□ 0.26
NPC1L1-204ENST00000546276 TNIKQ9UKE5 1360 aa16.66■□□□□ 0.26
NPC1L1-204ENST00000546276 ARID3CA6NKF2 412 aa16.64■□□□□ 0.25
NPC1L1-204ENST00000546276 CANXP27824 592 aaKnown RBP16.62■□□□□ 0.25
NPC1L1-204ENST00000546276 RB1CC1Q8TDY2 1594 aa16.58■□□□□ 0.25
NPC1L1-204ENST00000546276 CCDC136Q96JN2 1154 aa16.58■□□□□ 0.24
NPC1L1-204ENST00000546276 ANP32EQ9BTT0 268 aa16.57■□□□□ 0.24
NPC1L1-204ENST00000546276 MRS2Q9HD23 443 aa16.56■□□□□ 0.24
NPC1L1-204ENST00000546276 HIRIP3Q9BW71 556 aaPredicted RBP16.56■□□□□ 0.24
NPC1L1-204ENST00000546276 ZNF777Q9ULD5 760 aaPredicted RBP16.55■□□□□ 0.24
NPC1L1-204ENST00000546276 IRX6P78412 446 aaPredicted RBP16.54■□□□□ 0.24
NPC1L1-204ENST00000546276 ZBTB47Q9UFB7 747 aaPredicted RBP16.54■□□□□ 0.24
NPC1L1-204ENST00000546276 NBR1Q14596 966 aa16.52■□□□□ 0.24
NPC1L1-204ENST00000546276 WRNQ14191 1432 aaPredicted RBP eCLIP16.52■□□□□ 0.24
NPC1L1-204ENST00000546276 CEP164Q9UPV0 1460 aa16.51■□□□□ 0.23
NPC1L1-204ENST00000546276 FBLN2P98095 1184 aa16.51■□□□□ 0.23
NPC1L1-204ENST00000546276 CHIC2Q9UKJ5 165 aa16.5■□□□□ 0.23
NPC1L1-204ENST00000546276 TMC1Q8TDI8 760 aa16.5■□□□□ 0.23
NPC1L1-204ENST00000546276 SUPT16HQ9Y5B9 1047 aaKnown RBP16.49■□□□□ 0.23
NPC1L1-204ENST00000546276 NACADO15069 1562 aa16.49■□□□□ 0.23
NPC1L1-204ENST00000546276 MTUS2Q5JR59 1369 aa16.48■□□□□ 0.23
NPC1L1-204ENST00000546276 EIF4G2P78344 907 aaKnown RBP eCLIP16.47■□□□□ 0.23
NPC1L1-204ENST00000546276 SALL2Q9Y467 1007 aaPredicted RBP16.44■□□□□ 0.22
NPC1L1-204ENST00000546276 EIF5BO60841 1220 aaKnown RBP16.43■□□□□ 0.22
NPC1L1-204ENST00000546276 UPF2Q9HAU5 1272 aaKnown RBP16.38■□□□□ 0.21
NPC1L1-204ENST00000546276 NEFMP07197 916 aa16.37■□□□□ 0.21
NPC1L1-204ENST00000546276 CECR2Q9BXF3 1484 aa16.35■□□□□ 0.21
NPC1L1-204ENST00000546276 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.35■□□□□ 0.21
NPC1L1-204ENST00000546276 SOGA1O94964 1423 aa16.34■□□□□ 0.21
NPC1L1-204ENST00000546276 RRP7BPQ9NSQ0 103 aa16.34■□□□□ 0.21
NPC1L1-204ENST00000546276 BAZ1AQ9NRL2 1556 aaPredicted RBP16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms