RNA–Protein interactions for RNA: ENST00000289547.8

NPC1L1-201, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 5,048 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-201ENST00000289547 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
NPC1L1-201ENST00000289547 DCAF8L2P0C7V8 631 aa20.58■□□□□ 0.88
NPC1L1-201ENST00000289547 SHROOM4Q9ULL8 1493 aa19■□□□□ 0.63
NPC1L1-201ENST00000289547 ABCC9O60706 1549 aa18.8■□□□□ 0.6
NPC1L1-201ENST00000289547 SUPT5HO00267 1087 aaKnown RBP18.78■□□□□ 0.6
NPC1L1-201ENST00000289547 CCDC180Q9P1Z9 1646 aa18.41■□□□□ 0.54
NPC1L1-201ENST00000289547 PABPN1Q86U42 306 aaKnown RBP eCLIP18.17■□□□□ 0.5
NPC1L1-201ENST00000289547 PELP1Q8IZL8 1130 aaKnown RBP18.09■□□□□ 0.49
NPC1L1-201ENST00000289547 FAM9AQ8IZU1 332 aaPredicted RBP18.05■□□□□ 0.48
NPC1L1-201ENST00000289547 RB1CC1Q8TDY2 1594 aa17.92■□□□□ 0.46
NPC1L1-201ENST00000289547 PCGF6Q9BYE7 350 aa17.83■□□□□ 0.45
NPC1L1-201ENST00000289547 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
NPC1L1-201ENST00000289547 MYT1Q01538 1121 aa17.81■□□□□ 0.44
NPC1L1-201ENST00000289547 NACADO15069 1562 aa17.76■□□□□ 0.43
NPC1L1-201ENST00000289547 SCRIBQ14160 1630 aa17.68■□□□□ 0.42
NPC1L1-201ENST00000289547 EHMT2Q96KQ7 1210 aa17.67■□□□□ 0.42
NPC1L1-201ENST00000289547 TRIM41Q8WV44 630 aa17.66■□□□□ 0.42
NPC1L1-201ENST00000289547 APLP2Q06481 763 aa17.63■□□□□ 0.41
NPC1L1-201ENST00000289547 CENPBP07199 599 aaPredicted RBP17.54■□□□□ 0.4
NPC1L1-201ENST00000289547 DCAF1Q9Y4B6 1507 aa17.38■□□□□ 0.37
NPC1L1-201ENST00000289547 ZEB1P37275 1124 aaPredicted RBP17.38■□□□□ 0.37
NPC1L1-201ENST00000289547 HRCP23327 699 aa17.36■□□□□ 0.37
NPC1L1-201ENST00000289547 UBTFP17480 764 aaKnown RBP17.34■□□□□ 0.37
NPC1L1-201ENST00000289547 RANGAP1P46060 587 aaPredicted RBP17.34■□□□□ 0.37
NPC1L1-201ENST00000289547 ATP1B4Q9UN42 357 aaPredicted RBP17.3■□□□□ 0.36
NPC1L1-201ENST00000289547 ERICH6Q7L0X2 663 aa17.21■□□□□ 0.35
NPC1L1-201ENST00000289547 MYO15BQ96JP2 1530 aa17.19■□□□□ 0.34
NPC1L1-201ENST00000289547 CCER1Q8TC90 406 aaPredicted RBP17.11■□□□□ 0.33
NPC1L1-201ENST00000289547 YTHDC1Q96MU7 727 aaKnown RBP17.1■□□□□ 0.33
NPC1L1-201ENST00000289547 TTBK1Q5TCY1 1321 aaPredicted RBP17.07■□□□□ 0.32
NPC1L1-201ENST00000289547 PPARGC1BQ86YN6 1023 aaKnown RBP17.07■□□□□ 0.32
NPC1L1-201ENST00000289547 FBLN2P98095 1184 aa17.06■□□□□ 0.32
NPC1L1-201ENST00000289547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.05■□□□□ 0.32
NPC1L1-201ENST00000289547 HNRNPUL2Q1KMD3 747 aaKnown RBP17.05■□□□□ 0.32
NPC1L1-201ENST00000289547 BAZ1BQ9UIG0 1483 aaKnown RBP17.02■□□□□ 0.31
NPC1L1-201ENST00000289547 BAZ1AQ9NRL2 1556 aaPredicted RBP16.96■□□□□ 0.3
NPC1L1-201ENST00000289547 ERCC6Q03468 1493 aa16.9■□□□□ 0.3
NPC1L1-201ENST00000289547 TRIM26Q12899 539 aaPredicted RBP16.89■□□□□ 0.29
NPC1L1-201ENST00000289547 MYT1LQ9UL68 1186 aa16.88■□□□□ 0.29
NPC1L1-201ENST00000289547 CHIC1Q5VXU3 224 aa16.85■□□□□ 0.29
NPC1L1-201ENST00000289547 NEFLP07196 543 aa16.8■□□□□ 0.28
NPC1L1-201ENST00000289547 RSF1Q96T23 1441 aaPredicted RBP16.8■□□□□ 0.28
NPC1L1-201ENST00000289547 SMARCA2P51531 1590 aa16.8■□□□□ 0.28
NPC1L1-201ENST00000289547 CECR2Q9BXF3 1484 aa16.76■□□□□ 0.27
NPC1L1-201ENST00000289547 CHMP7Q8WUX9 453 aaPredicted RBP16.66■□□□□ 0.26
NPC1L1-201ENST00000289547 PDS5BQ9NTI5 1447 aa16.64■□□□□ 0.25
NPC1L1-201ENST00000289547 NPM1P06748 294 aaKnown RBP eCLIP16.64■□□□□ 0.25
NPC1L1-201ENST00000289547 GTF3C3Q9Y5Q9 886 aa16.62■□□□□ 0.25
NPC1L1-201ENST00000289547 CSRNP3Q8WYN3 585 aa16.6■□□□□ 0.25
NPC1L1-201ENST00000289547 LOC105371045A0A1W2PR82 267 aa16.56■□□□□ 0.24
NPC1L1-201ENST00000289547 MROH2BQ7Z745 1585 aa16.54■□□□□ 0.24
NPC1L1-201ENST00000289547 DIEXFQ68CQ4 756 aaKnown RBP16.53■□□□□ 0.24
NPC1L1-201ENST00000289547 ATAD2BQ9ULI0 1458 aa16.5■□□□□ 0.23
NPC1L1-201ENST00000289547 CDK11AQ9UQ88 783 aaPredicted RBP16.5■□□□□ 0.23
NPC1L1-201ENST00000289547 WRNQ14191 1432 aaPredicted RBP eCLIP16.46■□□□□ 0.23
NPC1L1-201ENST00000289547 SMARCA4P51532 1647 aa16.46■□□□□ 0.23
NPC1L1-201ENST00000289547 EIF4G1Q04637 1599 aaKnown RBP16.43■□□□□ 0.22
NPC1L1-201ENST00000289547 CADPSQ9ULU8 1353 aa16.43■□□□□ 0.22
NPC1L1-201ENST00000289547 P3H3Q8IVL6 736 aa16.43■□□□□ 0.22
NPC1L1-201ENST00000289547 ITGAEP38570 1179 aa16.41■□□□□ 0.22
NPC1L1-201ENST00000289547 ACIN1Q9UKV3 1341 aaKnown RBP16.4■□□□□ 0.22
NPC1L1-201ENST00000289547 TOP2AP11388 1531 aaKnown RBP16.4■□□□□ 0.22
NPC1L1-201ENST00000289547 KIF27Q86VH2 1401 aa16.36■□□□□ 0.21
NPC1L1-201ENST00000289547 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
NPC1L1-201ENST00000289547 ARID3CA6NKF2 412 aa16.33■□□□□ 0.2
NPC1L1-201ENST00000289547 NCAPD3P42695 1498 aa16.32■□□□□ 0.2
NPC1L1-201ENST00000289547 CEP164Q9UPV0 1460 aa16.32■□□□□ 0.2
NPC1L1-201ENST00000289547 FAM50AQ14320 339 aaKnown RBP16.31■□□□□ 0.2
NPC1L1-201ENST00000289547 EEA1Q15075 1411 aa16.3■□□□□ 0.2
NPC1L1-201ENST00000289547 WIZO95785 1651 aa16.29■□□□□ 0.2
NPC1L1-201ENST00000289547 CC2D2AQ9P2K1 1620 aa16.26■□□□□ 0.19
NPC1L1-201ENST00000289547 RTL5Q5HYW3 569 aaPredicted RBP16.24■□□□□ 0.19
NPC1L1-201ENST00000289547 ESF1Q9H501 851 aaKnown RBP16.23■□□□□ 0.19
NPC1L1-201ENST00000289547 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
NPC1L1-201ENST00000289547 SCAF1Q9H7N4 1312 aaKnown RBP16.22■□□□□ 0.19
NPC1L1-201ENST00000289547 SOGA1O94964 1423 aa16.22■□□□□ 0.19
NPC1L1-201ENST00000289547 FANCD2Q9BXW9 1451 aa16.2■□□□□ 0.18
NPC1L1-201ENST00000289547 BCANQ96GW7 911 aa16.2■□□□□ 0.18
NPC1L1-201ENST00000289547 CUX2O14529 1486 aa16.19■□□□□ 0.18
NPC1L1-201ENST00000289547 ZNF777Q9ULD5 760 aaPredicted RBP16.19■□□□□ 0.18
NPC1L1-201ENST00000289547 DAXXQ9UER7 740 aaPredicted RBP16.18■□□□□ 0.18
NPC1L1-201ENST00000289547 TRIM52Q96A61 297 aa16.13■□□□□ 0.17
NPC1L1-201ENST00000289547 BICRAQ9NZM4 1560 aa16.13■□□□□ 0.17
NPC1L1-201ENST00000289547 HMGXB3Q12766 1538 aa16.11■□□□□ 0.17
NPC1L1-201ENST00000289547 PLEKHD1A6NEE1 506 aa16.09■□□□□ 0.17
NPC1L1-201ENST00000289547 CARMIL1Q5VZK9 1371 aa16.09■□□□□ 0.17
NPC1L1-201ENST00000289547 GOLGA3Q08378 1498 aa16.08■□□□□ 0.17
NPC1L1-201ENST00000289547 NEUROD1Q13562 356 aa16.08■□□□□ 0.16
NPC1L1-201ENST00000289547 TDRD9Q8NDG6 1382 aaKnown RBP16.08■□□□□ 0.16
NPC1L1-201ENST00000289547 TRHP20396 242 aaPredicted RBP16.05■□□□□ 0.16
NPC1L1-201ENST00000289547 CARMIL2Q6F5E8 1435 aa16.03■□□□□ 0.16
NPC1L1-201ENST00000289547 KCNH8Q96L42 1107 aa16.03■□□□□ 0.16
NPC1L1-201ENST00000289547 DNAJC5BQ9UF47 199 aa16.03■□□□□ 0.16
NPC1L1-201ENST00000289547 MTUS2Q5JR59 1369 aa16.02■□□□□ 0.15
NPC1L1-201ENST00000289547 OSCARQ8IYS5 282 aa16.02■□□□□ 0.15
NPC1L1-201ENST00000289547 ZNF316A6NFI3 1004 aaPredicted RBP16.01■□□□□ 0.15
NPC1L1-201ENST00000289547 CLIP1P30622 1438 aa16■□□□□ 0.15
NPC1L1-201ENST00000289547 TSPY4P0CV99 314 aa15.96■□□□□ 0.15
NPC1L1-201ENST00000289547 TSPY10P0CW01 314 aa15.96■□□□□ 0.15
NPC1L1-201ENST00000289547 MRC2Q9UBG0 1479 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms