Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 AC005332.7-201ENST00000614046 2005 ntBASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV1-1A0A0B4J248 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 AL158211.5-201ENST00000623583 2518 ntBASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 STX4-202ENST00000394998 1498 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRAV1-1A0A0B4J248 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAV1-1A0A0B4J248 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAV1-1A0A0B4J248 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRAV1-1A0A0B4J248 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
TRAV1-1A0A0B4J248 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 AC087239.1-201ENST00000622671 572 ntBASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV1-1A0A0B4J248 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 RBM38-205ENST00000440234 686 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 AC026471.1-201ENST00000564629 3026 ntBASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV1-1A0A0B4J248 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 CLTA-206ENST00000466396 695 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms