Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC116Q8IYX3 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CCDC116Q8IYX3 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 KRT19P1-201ENST00000405746 1186 ntBASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC116Q8IYX3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 AC026271.2-201ENST00000428091 497 ntBASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 RARRES2P6-201ENST00000567333 442 ntBASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 KRT16P2-201ENST00000414673 1423 ntBASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC116Q8IYX3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 PLK5-205ENST00000642079 1969 ntBASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC116Q8IYX3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 AC121338.2-201ENST00000622535 1744 ntBASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 KRT18P20-201ENST00000548986 1279 ntBASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC116Q8IYX3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC116Q8IYX3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC116Q8IYX3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms