Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SNHG20-203ENST00000565256 1234 ntTSL 1 (best)11.91□□□□□ -0.52e-25■■■□□ 16.6
SMNDC1O75940 SNHG20-205ENST00000568363 786 ntTSL 1 (best)11.73□□□□□ -0.532e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-209ENST00000564509 806 ntTSL 1 (best)11.56□□□□□ -0.562e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-201ENST00000392476 2957 ntAPPRIS ALT1 TSL 2 BASIC10.98□□□□□ -0.652e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-211ENST00000569632 377 ntTSL 1 (best)10.74□□□□□ -0.692e-25■■■□□ 16.6
SMNDC1O75940 SCARNA16-201ENST00000515981 187 ntBASIC8.64□□□□□ -1.032e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-208ENST00000564414 528 ntTSL 1 (best)7.29□□□□□ -1.242e-25■■■□□ 16.6
SMNDC1O75940 SEC14L1-210ENST00000568056 424 ntTSL 1 (best)6.99□□□□□ -1.292e-25■■■□□ 16.6
SMNDC1O75940 HGS-216ENST00000576498 1004 ntTSL 216.11■□□□□ 0.175e-6■■■□□ 16.6
SMNDC1O75940 STAG3L5P-PVRIG2P-PILRB-203ENST00000470714 868 ntTSL 314.97□□□□□ -0.011e-6■■■□□ 16.6
SMNDC1O75940 STAG3L5P-PVRIG2P-PILRB-205ENST00000483329 819 ntTSL 510.94□□□□□ -0.661e-6■■■□□ 16.6
SMNDC1O75940 C22orf34-202ENST00000400023 1469 ntTSL 1 (best)14.16□□□□□ -0.147e-7■■■□□ 16.6
SMNDC1O75940 ULK1-205ENST00000541761 1262 ntTSL 213.83□□□□□ -0.29e-7■■■□□ 16.6
SMNDC1O75940 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.85■■□□□ 1.579e-8■■■□□ 16.6
SMNDC1O75940 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.71■■□□□ 1.399e-8■■■□□ 16.6
SMNDC1O75940 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC22.05■■□□□ 1.129e-8■■■□□ 16.6
SMNDC1O75940 EZH2-209ENST00000492143 3641 ntTSL 218.37■□□□□ 0.539e-8■■■□□ 16.6
SMNDC1O75940 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.499e-8■■■□□ 16.6
SMNDC1O75940 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC7.6□□□□□ -1.199e-8■■■□□ 16.6
SMNDC1O75940 AKAP8-205ENST00000599883 860 ntTSL 517.28■□□□□ 0.369e-7■■■□□ 16.6
SMNDC1O75940 AKAP8-202ENST00000537303 1350 ntTSL 215.24■□□□□ 0.039e-7■■■□□ 16.6
SMNDC1O75940 AKAP8-201ENST00000269701 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.229e-7■■■□□ 16.6
SMNDC1O75940 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.84■□□□□ 0.771e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.63■□□□□ 0.731e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.47■□□□□ 0.551e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.96■□□□□ 0.461e-9■■■□□ 16.5
SMNDC1O75940 FNDC3B-207ENST00000469491 2916 ntTSL 216.38■□□□□ 0.211e-9■■■□□ 16.5
SMNDC1O75940 FNDC3B-202ENST00000415807 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.561e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-213ENST00000476609 3598 ntTSL 210.55□□□□□ -0.721e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-220ENST00000627726 3135 ntTSL 5 BASIC9.32□□□□□ -0.921e-9■■■□□ 16.5
SMNDC1O75940 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.931e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-208ENST00000418101 776 ntTSL 39.23□□□□□ -0.931e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC9.09□□□□□ -0.951e-9■■■□□ 16.5
SMNDC1O75940 FNDC3B-201ENST00000336824 7904 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.991e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.991e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC8.8□□□□□ -11e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-209ENST00000421882 3416 ntTSL 58.72□□□□□ -1.011e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC8.27□□□□□ -1.091e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC8.19□□□□□ -1.11e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.74□□□□□ -1.171e-9■■■□□ 16.5
SMNDC1O75940 FNDC3B-210ENST00000483344 666 ntTSL 37.27□□□□□ -1.251e-9■■■□□ 16.5
SMNDC1O75940 MAP4K4-207ENST00000417294 4251 ntTSL 56.77□□□□□ -1.331e-9■■■□□ 16.5
SMNDC1O75940 UBAP2-207ENST00000421278 833 ntTSL 57.58□□□□□ -1.21e-20■■■□□ 16.5
SMNDC1O75940 UBAP2-206ENST00000412543 1349 ntTSL 56.5□□□□□ -1.371e-20■■■□□ 16.5
SMNDC1O75940 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.23■□□□□ 0.512e-8■■■□□ 16.5
SMNDC1O75940 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.292e-8■■■□□ 16.5
SMNDC1O75940 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.22e-8■■■□□ 16.5
SMNDC1O75940 GPI-216ENST00000592144 678 ntTSL 316.29■□□□□ 0.25e-12■■■□□ 16.5
SMNDC1O75940 ANKRD23-206ENST00000482175 2040 ntTSL 215.97■□□□□ 0.152e-8■■■□□ 16.5
SMNDC1O75940 ANKRD39-202ENST00000443120 4965 ntTSL 215.88■□□□□ 0.132e-8■■■□□ 16.5
SMNDC1O75940 GPI-209ENST00000589399 565 ntTSL 515.47■□□□□ 0.075e-12■■■□□ 16.5
SMNDC1O75940 GPI-211ENST00000589640 571 ntTSL 415.44■□□□□ 0.065e-12■■■□□ 16.5
SMNDC1O75940 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.52□□□□□ -0.092e-8■■■□□ 16.5
SMNDC1O75940 ANKRD23-204ENST00000462692 857 ntTSL 514.4□□□□□ -0.12e-8■■■□□ 16.5
SMNDC1O75940 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.85□□□□□ -0.192e-8■■■□□ 16.5
SMNDC1O75940 HMGN1-211ENST00000471260 615 ntTSL 312.3□□□□□ -0.442e-7■■■□□ 16.5
SMNDC1O75940 ANKRD23-205ENST00000476975 1132 ntTSL 512.21□□□□□ -0.452e-8■■■□□ 16.5
SMNDC1O75940 RAB18-201ENST00000356940 4886 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.642e-8■■■□□ 16.5
SMNDC1O75940 HMGN1-213ENST00000482192 793 ntTSL 310.67□□□□□ -0.72e-7■■■□□ 16.5
SMNDC1O75940 RAB18-202ENST00000375802 617 ntTSL 5 BASIC10.46□□□□□ -0.732e-8■■■□□ 16.5
SMNDC1O75940 RAB18-204ENST00000465772 985 ntTSL 28.4□□□□□ -1.062e-8■■■□□ 16.5
SMNDC1O75940 GPI-215ENST00000591204 559 ntTSL 48.23□□□□□ -1.095e-12■■■□□ 16.5
SMNDC1O75940 RAB18-203ENST00000423465 873 ntTSL 57.23□□□□□ -1.252e-8■■■□□ 16.5
SMNDC1O75940 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.19□□□□□ -1.582e-8■■■□□ 16.5
SMNDC1O75940 THAP9-AS1-207ENST00000507660 550 ntTSL 39□□□□□ -0.972e-47■■■□□ 16.5
SMNDC1O75940 THAP9-AS1-212ENST00000513581 683 ntTSL 28.79□□□□□ -12e-47■■■□□ 16.5
SMNDC1O75940 THAP9-AS1-203ENST00000504718 573 ntTSL 46.25□□□□□ -1.412e-47■■■□□ 16.5
SMNDC1O75940 THAP9-AS1-206ENST00000505028 552 ntTSL 46.15□□□□□ -1.422e-47■■■□□ 16.5
SMNDC1O75940 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.95■□□□□ 0.943e-6■■■□□ 16.5
SMNDC1O75940 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.78■□□□□ 0.763e-6■■■□□ 16.5
SMNDC1O75940 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.223e-6■■■□□ 16.5
SMNDC1O75940 SPPL2B-213ENST00000621568 1017 ntTSL 516■□□□□ 0.153e-6■■■□□ 16.5
SMNDC1O75940 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.023e-6■■■□□ 16.5
SMNDC1O75940 THAP7-208ENST00000498406 1957 ntTSL 219.24■□□□□ 0.674e-8■■■□□ 16.4
SMNDC1O75940 RER1-201ENST00000306256 695 ntTSL 518.52■□□□□ 0.564e-8■■■□□ 16.4
SMNDC1O75940 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.23■□□□□ 0.514e-8■■■□□ 16.4
SMNDC1O75940 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.494e-8■■■□□ 16.4
SMNDC1O75940 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.86■□□□□ 0.454e-8■■■□□ 16.4
SMNDC1O75940 THAP7-204ENST00000471073 1809 ntTSL 217.77■□□□□ 0.434e-8■■■□□ 16.4
SMNDC1O75940 THAP7-206ENST00000476667 1671 ntTSL 517.72■□□□□ 0.434e-8■■■□□ 16.4
SMNDC1O75940 THAP7-205ENST00000471723 653 ntTSL 317.7■□□□□ 0.424e-8■■■□□ 16.4
SMNDC1O75940 THAP7-203ENST00000466670 1080 ntTSL 517■□□□□ 0.314e-8■■■□□ 16.4
SMNDC1O75940 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.284e-8■■■□□ 16.4
SMNDC1O75940 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.03■□□□□ 0.164e-8■■■□□ 16.4
SMNDC1O75940 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.064e-8■■■□□ 16.4
SMNDC1O75940 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.034e-8■■■□□ 16.4
SMNDC1O75940 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.16■□□□□ 0.024e-8■■■□□ 16.4
SMNDC1O75940 RER1-208ENST00000493207 686 ntTSL 215.01□□□□□ -0.014e-8■■■□□ 16.4
SMNDC1O75940 PLK1-208ENST00000568568 582 ntTSL 313.61□□□□□ -0.234e-8■■■□□ 16.4
SMNDC1O75940 PLK1-207ENST00000567897 711 ntTSL 313.12□□□□□ -0.314e-8■■■□□ 16.4
SMNDC1O75940 THAP7-207ENST00000488975 507 ntTSL 512.85□□□□□ -0.354e-8■■■□□ 16.4
SMNDC1O75940 PUM1-221ENST00000530669 582 ntTSL 39.79□□□□□ -0.844e-8■■■□□ 16.4
SMNDC1O75940 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.944e-8■■■□□ 16.4
SMNDC1O75940 RER1-205ENST00000443438 540 ntTSL 28.12□□□□□ -1.114e-8■■■□□ 16.4
SMNDC1O75940 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.2□□□□□ -2.064e-8■■■□□ 16.4
SMNDC1O75940 CDC45-212ENST00000493724 469 ntTSL 211.79□□□□□ -0.522e-7■■■□□ 16.4
SMNDC1O75940 TMC6-210ENST00000588792 843 ntTSL 216.3■□□□□ 0.25e-7■■■□□ 16.4
SMNDC1O75940 TMC6-211ENST00000589271 1099 ntTSL 515.18■□□□□ 0.025e-7■■■□□ 16.4
SMNDC1O75940 TMC6-205ENST00000586126 821 ntTSL 314.81□□□□□ -0.045e-7■■■□□ 16.4
SMNDC1O75940 TMC6-223ENST00000592594 551 ntTSL 414.51□□□□□ -0.095e-7■■■□□ 16.4
Retrieved 100 of 11,362 protein–RNA pairs in 135.4 ms