Protein–RNA interactions for Protein: Q9H269

VPS16, Vacuolar protein sorting-associated protein 16 homolog, humanhuman

Predictions only

Length 839 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16Q9H269 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
VPS16Q9H269 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.89■■□□□ 1.26
VPS16Q9H269 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
VPS16Q9H269 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
VPS16Q9H269 AC106739.1-201ENST00000617035 715 ntBASIC22.89■■□□□ 1.25
VPS16Q9H269 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
VPS16Q9H269 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
VPS16Q9H269 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.25
VPS16Q9H269 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.89■■□□□ 1.25
VPS16Q9H269 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
VPS16Q9H269 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
VPS16Q9H269 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.89■■□□□ 1.25
VPS16Q9H269 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
VPS16Q9H269 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
VPS16Q9H269 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
VPS16Q9H269 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.88■■□□□ 1.25
VPS16Q9H269 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.88■■□□□ 1.25
VPS16Q9H269 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
VPS16Q9H269 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.88■■□□□ 1.25
VPS16Q9H269 AP001330.3-201ENST00000520123 633 ntBASIC22.88■■□□□ 1.25
VPS16Q9H269 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
VPS16Q9H269 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
VPS16Q9H269 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
VPS16Q9H269 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC22.87■■□□□ 1.25
VPS16Q9H269 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
VPS16Q9H269 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS16Q9H269 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS16Q9H269 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS16Q9H269 FXN-202ENST00000396364 980 ntTSL 5 BASIC22.87■■□□□ 1.25
VPS16Q9H269 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS16Q9H269 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
VPS16Q9H269 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
VPS16Q9H269 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
VPS16Q9H269 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
VPS16Q9H269 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.86■■□□□ 1.25
VPS16Q9H269 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.86■■□□□ 1.25
VPS16Q9H269 AP005212.1-201ENST00000581547 1997 ntBASIC22.86■■□□□ 1.25
VPS16Q9H269 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.86■■□□□ 1.25
VPS16Q9H269 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS16Q9H269 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
VPS16Q9H269 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.85■■□□□ 1.25
VPS16Q9H269 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
VPS16Q9H269 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS16Q9H269 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
VPS16Q9H269 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.85■■□□□ 1.25
VPS16Q9H269 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.85■■□□□ 1.25
VPS16Q9H269 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS16Q9H269 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS16Q9H269 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS16Q9H269 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS16Q9H269 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC22.85■■□□□ 1.25
VPS16Q9H269 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.84■■□□□ 1.25
VPS16Q9H269 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
VPS16Q9H269 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 GABARAPL3-202ENST00000624044 1851 ntBASIC22.84■■□□□ 1.25
VPS16Q9H269 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
VPS16Q9H269 EDA-201ENST00000338901 1233 ntBASIC22.84■■□□□ 1.25
VPS16Q9H269 MIR572-201ENST00000384983 95 ntBASIC22.84■■□□□ 1.25
VPS16Q9H269 RNF146-206ENST00000480444 843 ntTSL 2 BASIC22.84■■□□□ 1.25
VPS16Q9H269 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.84■■□□□ 1.25
VPS16Q9H269 AC110285.6-201ENST00000617652 491 ntBASIC22.84■■□□□ 1.25
VPS16Q9H269 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
VPS16Q9H269 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
VPS16Q9H269 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
VPS16Q9H269 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.84■■□□□ 1.25
VPS16Q9H269 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS16Q9H269 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS16Q9H269 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
VPS16Q9H269 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS16Q9H269 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS16Q9H269 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
VPS16Q9H269 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS16Q9H269 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.83■■□□□ 1.25
VPS16Q9H269 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.83■■□□□ 1.25
VPS16Q9H269 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.83■■□□□ 1.25
VPS16Q9H269 AF213884.3-201ENST00000563833 479 ntBASIC22.83■■□□□ 1.25
VPS16Q9H269 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.83■■□□□ 1.25
VPS16Q9H269 RASA4CP-201ENST00000424092 1398 ntBASIC22.83■■□□□ 1.25
VPS16Q9H269 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.24
VPS16Q9H269 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
VPS16Q9H269 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS16Q9H269 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS16Q9H269 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms