Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 METTL17-208ENST00000554354 249 ntTSL 59.17□□□□□ -0.942e-6■■■□□ 14.6
U2AF1Q01081 IL17RC-213ENST00000451231 2163 ntTSL 228.27■■■□□ 2.121e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-210ENST00000438091 1208 ntTSL 527.34■■□□□ 1.971e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.871e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.851e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-230ENST00000498214 2346 ntTSL 226.57■■□□□ 1.841e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-214ENST00000451271 2284 ntTSL 1 (best)26.53■■□□□ 1.841e-7■■■□□ 14.6
U2AF1Q01081 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.81e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-209ENST00000436503 1445 ntTSL 1 (best)26.26■■□□□ 1.791e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.711e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-225ENST00000483582 2467 ntTSL 1 (best)25.35■■□□□ 1.651e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-227ENST00000494365 2499 ntTSL 225.26■■□□□ 1.631e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-207ENST00000470046 1211 ntTSL 224.93■■□□□ 1.581e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.531e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-204ENST00000412901 1354 ntTSL 224.47■■□□□ 1.511e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-206ENST00000427222 1811 ntTSL 523.83■■□□□ 1.411e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC23.72■■□□□ 1.391e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.331e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-226ENST00000490512 1059 ntTSL 222.78■■□□□ 1.241e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-212ENST00000451165 1053 ntTSL 222.78■■□□□ 1.241e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-208ENST00000434756 946 ntTSL 522.68■■□□□ 1.221e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-219ENST00000466046 2547 ntTSL 222.6■■□□□ 1.211e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-217ENST00000464406 807 ntTSL 222.5■■□□□ 1.191e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-207ENST00000424206 949 ntTSL 321.88■■□□□ 1.091e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.561e-7■■■□□ 14.6
U2AF1Q01081 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.42■□□□□ 0.541e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.521e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.471e-7■■■□□ 14.6
U2AF1Q01081 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC17.98■□□□□ 0.471e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-205ENST00000401672 2199 ntTSL 217.67■□□□□ 0.421e-7■■■□□ 14.6
U2AF1Q01081 IL17RC-223ENST00000478206 597 ntTSL 1 (best)17.67■□□□□ 0.421e-7■■■□□ 14.6
U2AF1Q01081 RTN3-207ENST00000536011 992 ntTSL 217.53■□□□□ 0.41e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.151e-7■■■□□ 14.6
U2AF1Q01081 PPP6R2-201ENST00000216061 3415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.071e-7■■■□□ 14.6
U2AF1Q01081 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC14.87□□□□□ -0.031e-7■■■□□ 14.6
U2AF1Q01081 RTN3-203ENST00000341307 2524 ntTSL 2 BASIC14.71□□□□□ -0.051e-7■■■□□ 14.6
U2AF1Q01081 RTN3-206ENST00000377819 4937 ntTSL 1 (best) BASIC13.04□□□□□ -0.321e-7■■■□□ 14.6
U2AF1Q01081 RTN3-208ENST00000537981 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.371e-7■■■□□ 14.6
U2AF1Q01081 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC11.03□□□□□ -0.641e-7■■■□□ 14.6
U2AF1Q01081 KDM3B-207ENST00000510866 6324 ntTSL 1 (best)9.23□□□□□ -0.931e-7■■■□□ 14.6
U2AF1Q01081 KDM3B-204ENST00000507996 3034 ntTSL 27.52□□□□□ -1.211e-7■■■□□ 14.6
U2AF1Q01081 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.64□□□□□ -1.351e-7■■■□□ 14.6
U2AF1Q01081 CCNL2-216ENST00000488340 1598 ntTSL 229.34■■■□□ 2.291e-17■■■□□ 14.6
U2AF1Q01081 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.61e-17■■■□□ 14.6
U2AF1Q01081 CCNL2-213ENST00000481223 2815 ntTSL 224.08■■□□□ 1.451e-17■■■□□ 14.6
U2AF1Q01081 CCNL2-215ENST00000482621 2059 ntTSL 220.55■□□□□ 0.881e-17■■■□□ 14.6
U2AF1Q01081 CCNL2-218ENST00000496007 4452 ntTSL 217.51■□□□□ 0.391e-17■■■□□ 14.6
U2AF1Q01081 CCNL2-209ENST00000471930 846 ntTSL 517.17■□□□□ 0.341e-17■■■□□ 14.6
U2AF1Q01081 TCP1-218ENST00000546204 566 ntTSL 211.58□□□□□ -0.563e-24■■■□□ 14.6
U2AF1Q01081 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC13.55□□□□□ -0.241e-7■■■□□ 14.6
U2AF1Q01081 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.731e-7■■■□□ 14.6
U2AF1Q01081 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.861e-7■■■□□ 14.6
U2AF1Q01081 SRSF1-206ENST00000583741 1465 ntTSL 527.27■■□□□ 1.964e-9■■□□□ 14.5
U2AF1Q01081 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC24.16■■□□□ 1.464e-9■■□□□ 14.5
U2AF1Q01081 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC23.92■■□□□ 1.424e-9■■□□□ 14.5
U2AF1Q01081 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.284e-9■■□□□ 14.5
U2AF1Q01081 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC17.83■□□□□ 0.444e-9■■□□□ 14.5
U2AF1Q01081 SRSF1-204ENST00000581979 1720 ntTSL 1 (best)16.59■□□□□ 0.254e-9■■□□□ 14.5
U2AF1Q01081 HNRNPH1-210ENST00000504549 980 ntTSL 522.8■■□□□ 1.241e-6■■□□□ 14.5
U2AF1Q01081 HNRNPH1-205ENST00000502632 1509 ntTSL 219.79■□□□□ 0.761e-6■■□□□ 14.5
U2AF1Q01081 HNRNPH1-247ENST00000523921 584 ntTSL 215.47■□□□□ 0.071e-6■■□□□ 14.5
U2AF1Q01081 HNRNPH1-206ENST00000502904 2913 ntTSL 212.22□□□□□ -0.451e-6■■□□□ 14.5
U2AF1Q01081 TOX3-203ENST00000563091 572 ntTSL 411.5□□□□□ -0.579e-7■■□□□ 14.5
U2AF1Q01081 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC7.23□□□□□ -1.259e-7■■□□□ 14.5
U2AF1Q01081 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC10.53□□□□□ -0.721e-6■■□□□ 14.5
U2AF1Q01081 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC30.08■■■□□ 2.412e-6■■□□□ 14.4
U2AF1Q01081 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.592e-6■■□□□ 14.4
U2AF1Q01081 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC25■■□□□ 1.592e-6■■□□□ 14.4
U2AF1Q01081 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC23.45■■□□□ 1.342e-6■■□□□ 14.4
U2AF1Q01081 AL365205.1-201ENST00000456057 3947 ntTSL 221.15■□□□□ 0.982e-6■■□□□ 14.4
U2AF1Q01081 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.672e-6■■□□□ 14.4
U2AF1Q01081 AL365205.1-203ENST00000335515 2871 ntTSL 217.62■□□□□ 0.412e-6■■□□□ 14.4
U2AF1Q01081 AL365205.1-202ENST00000487182 3043 ntTSL 216.39■□□□□ 0.212e-6■■□□□ 14.4
U2AF1Q01081 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC19.87■□□□□ 0.778e-7■■□□□ 14.4
U2AF1Q01081 TBC1D8-201ENST00000376840 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.188e-7■■□□□ 14.4
U2AF1Q01081 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.983e-7■■□□□ 14.4
U2AF1Q01081 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.824e-12■■□□□ 14.4
U2AF1Q01081 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.714e-12■■□□□ 14.4
U2AF1Q01081 SERPINA3-202ENST00000393080 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.024e-12■■□□□ 14.4
U2AF1Q01081 SERPINA3-208ENST00000556968 1289 ntTSL 1 (best)14.79□□□□□ -0.044e-12■■□□□ 14.4
U2AF1Q01081 SERPINA3-201ENST00000393078 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.064e-12■■□□□ 14.4
U2AF1Q01081 IDH1-203ENST00000415913 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.074e-12■■□□□ 14.4
U2AF1Q01081 IDH1-201ENST00000345146 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.084e-12■■□□□ 14.4
U2AF1Q01081 SERPINA3-206ENST00000555820 981 ntTSL 513.91□□□□□ -0.184e-12■■□□□ 14.4
U2AF1Q01081 SERPINA3-205ENST00000485588 575 ntTSL 1 (best)11.85□□□□□ -0.514e-12■■□□□ 14.4
U2AF1Q01081 AL049839.2-201ENST00000553947 3067 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.554e-12■■□□□ 14.4
U2AF1Q01081 SERPINA3-207ENST00000556388 480 ntTSL 411.57□□□□□ -0.564e-12■■□□□ 14.4
U2AF1Q01081 MYSM1-202ENST00000466774 560 ntTSL 323.01■■□□□ 1.274e-9■■□□□ 14.4
U2AF1Q01081 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.644e-9■■□□□ 14.4
U2AF1Q01081 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC30.01■■■□□ 2.41e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-222ENST00000596378 2314 ntTSL 1 (best)29.57■■■□□ 2.321e-12■■□□□ 14.4
U2AF1Q01081 METTL9-210ENST00000570074 447 ntTSL 326.95■■□□□ 1.91e-12■■□□□ 14.4
U2AF1Q01081 METTL9-203ENST00000562379 701 ntTSL 226.76■■□□□ 1.871e-12■■□□□ 14.4
U2AF1Q01081 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.111e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-207ENST00000468822 768 ntTSL 220.66■□□□□ 0.91e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-223ENST00000600523 575 ntTSL 517.37■□□□□ 0.371e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-221ENST00000593639 563 ntTSL 512.27□□□□□ -0.451e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-217ENST00000490543 673 ntTSL 511.97□□□□□ -0.491e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-205ENST00000462710 2624 ntTSL 511.94□□□□□ -0.51e-12■■□□□ 14.4
U2AF1Q01081 SRRM1-212ENST00000479034 2671 ntTSL 59.67□□□□□ -0.861e-12■■□□□ 14.4
Retrieved 100 of 10,096 protein–RNA pairs in 89.9 ms