Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CHKB-CPT1BH3BT56 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CHKB-CPT1BH3BT56 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC11.64□□□□□ -0.55
CHKB-CPT1BH3BT56 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 ZNRF2P1-201ENST00000441407 443 ntBASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 PEX7-203ENST00000541292 945 ntTSL 5 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CHKB-CPT1BH3BT56 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 AC018445.3-201ENST00000624177 1945 ntBASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 EBPL-202ENST00000378268 680 ntTSL 3 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms