Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TCRBV7S3A2A0A539 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.22■□□□□ 0.99
TCRBV7S3A2A0A539 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
TCRBV7S3A2A0A539 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TCRBV7S3A2A0A539 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TCRBV7S3A2A0A539 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TCRBV7S3A2A0A539 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.99
TCRBV7S3A2A0A539 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
TCRBV7S3A2A0A539 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
TCRBV7S3A2A0A539 AC027702.1-201ENST00000563810 1770 ntBASIC21.2■□□□□ 0.99
TCRBV7S3A2A0A539 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 GABARAPL3-202ENST00000624044 1851 ntBASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 MIR6084-201ENST00000622012 110 ntBASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TCRBV7S3A2A0A539 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 AC053503.5-201ENST00000601508 636 ntBASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TCRBV7S3A2A0A539 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 AL391422.3-201ENST00000603791 2761 ntBASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 AL139246.5-201ENST00000606645 996 ntBASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 AC007225.1-201ENST00000566331 1836 ntBASIC21.18■□□□□ 0.98
TCRBV7S3A2A0A539 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TCRBV7S3A2A0A539 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 AL354811.1-201ENST00000610286 706 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms