Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 AL049812.1-201ENST00000432563 2267 ntBASIC13.12□□□□□ -0.31
LINC00643Q86TS7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC00643Q86TS7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC00643Q86TS7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC00643Q86TS7 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 AP000997.3-201ENST00000623333 2250 ntBASIC13.09□□□□□ -0.31
LINC00643Q86TS7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC13.09□□□□□ -0.31
LINC00643Q86TS7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms