Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
USF1P22415 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USF1P22415 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
USF1P22415 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.67■□□□□ 0.42
USF1P22415 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.67■□□□□ 0.42
USF1P22415 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 MIPEPP3-201ENST00000412105 444 ntBASIC17.67■□□□□ 0.42
USF1P22415 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
USF1P22415 AC098934.4-201ENST00000564127 592 ntBASIC17.67■□□□□ 0.42
USF1P22415 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.67■□□□□ 0.42
USF1P22415 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.67■□□□□ 0.42
USF1P22415 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.67■□□□□ 0.42
USF1P22415 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USF1P22415 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF1P22415 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.67■□□□□ 0.42
USF1P22415 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
USF1P22415 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.66■□□□□ 0.42
USF1P22415 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.66■□□□□ 0.42
USF1P22415 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
USF1P22415 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.66■□□□□ 0.42
USF1P22415 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.66■□□□□ 0.42
USF1P22415 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.66■□□□□ 0.42
USF1P22415 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
USF1P22415 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
USF1P22415 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 AC087742.1-201ENST00000575880 1738 ntBASIC17.66■□□□□ 0.42
USF1P22415 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF1P22415 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.65■□□□□ 0.42
USF1P22415 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.65■□□□□ 0.42
USF1P22415 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.65■□□□□ 0.42
USF1P22415 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
USF1P22415 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.65■□□□□ 0.42
USF1P22415 POU5F1P4-201ENST00000413175 1085 ntBASIC17.65■□□□□ 0.42
USF1P22415 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.65■□□□□ 0.42
USF1P22415 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.65■□□□□ 0.42
USF1P22415 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.65■□□□□ 0.42
USF1P22415 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
USF1P22415 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 AC092053.2-201ENST00000640557 1818 ntBASIC17.65■□□□□ 0.42
USF1P22415 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
USF1P22415 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.65■□□□□ 0.42
USF1P22415 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF1P22415 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.42
USF1P22415 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF1P22415 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF1P22415 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USF1P22415 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF1P22415 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.64■□□□□ 0.41
USF1P22415 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.64■□□□□ 0.41
USF1P22415 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
USF1P22415 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
USF1P22415 AL512625.2-201ENST00000417533 625 ntBASIC17.64■□□□□ 0.41
USF1P22415 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.64■□□□□ 0.41
USF1P22415 RNA5SP413-201ENST00000516373 109 ntBASIC17.64■□□□□ 0.41
USF1P22415 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USF1P22415 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USF1P22415 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.64■□□□□ 0.41
USF1P22415 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
USF1P22415 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF1P22415 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF1P22415 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
USF1P22415 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms