Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 AL356441.2-201ENST00000443009 864 ntBASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM49D1C9J1S8 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TRIM49D1C9J1S8 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM49D1C9J1S8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM49D1C9J1S8 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms