Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
KDM3AQ9Y4C1 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
KDM3AQ9Y4C1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
KDM3AQ9Y4C1 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
KDM3AQ9Y4C1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
KDM3AQ9Y4C1 AL161658.1-201ENST00000623641 1967 ntBASIC30.15■■■□□ 2.42
KDM3AQ9Y4C1 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
KDM3AQ9Y4C1 AC087741.3-201ENST00000624270 1347 ntBASIC30.13■■■□□ 2.41
KDM3AQ9Y4C1 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
KDM3AQ9Y4C1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.12■■■□□ 2.41
KDM3AQ9Y4C1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.12■■■□□ 2.41
KDM3AQ9Y4C1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
KDM3AQ9Y4C1 AC005559.1-201ENST00000589661 871 ntBASIC30.1■■■□□ 2.41
KDM3AQ9Y4C1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
KDM3AQ9Y4C1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
KDM3AQ9Y4C1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.09■■■□□ 2.41
KDM3AQ9Y4C1 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.08■■■□□ 2.41
KDM3AQ9Y4C1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
KDM3AQ9Y4C1 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.08■■■□□ 2.41
KDM3AQ9Y4C1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
KDM3AQ9Y4C1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
KDM3AQ9Y4C1 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.07■■■□□ 2.4
KDM3AQ9Y4C1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.07■■■□□ 2.4
KDM3AQ9Y4C1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
KDM3AQ9Y4C1 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
KDM3AQ9Y4C1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.05■■■□□ 2.4
KDM3AQ9Y4C1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
KDM3AQ9Y4C1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.05■■■□□ 2.4
KDM3AQ9Y4C1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
KDM3AQ9Y4C1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
KDM3AQ9Y4C1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
KDM3AQ9Y4C1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
KDM3AQ9Y4C1 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
KDM3AQ9Y4C1 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
KDM3AQ9Y4C1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
KDM3AQ9Y4C1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
KDM3AQ9Y4C1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
KDM3AQ9Y4C1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30■■■□□ 2.39
KDM3AQ9Y4C1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
KDM3AQ9Y4C1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC29.99■■■□□ 2.39
KDM3AQ9Y4C1 AC044849.2-201ENST00000606596 710 ntBASIC29.99■■■□□ 2.39
KDM3AQ9Y4C1 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.99■■■□□ 2.39
KDM3AQ9Y4C1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
KDM3AQ9Y4C1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.98■■■□□ 2.39
KDM3AQ9Y4C1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
KDM3AQ9Y4C1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
KDM3AQ9Y4C1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
KDM3AQ9Y4C1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.97■■■□□ 2.39
KDM3AQ9Y4C1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
KDM3AQ9Y4C1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.93■■■□□ 2.38
KDM3AQ9Y4C1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
KDM3AQ9Y4C1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC29.92■■■□□ 2.38
KDM3AQ9Y4C1 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
KDM3AQ9Y4C1 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
KDM3AQ9Y4C1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
KDM3AQ9Y4C1 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
KDM3AQ9Y4C1 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
KDM3AQ9Y4C1 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
KDM3AQ9Y4C1 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
KDM3AQ9Y4C1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
KDM3AQ9Y4C1 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
KDM3AQ9Y4C1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.89■■■□□ 2.38
KDM3AQ9Y4C1 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
KDM3AQ9Y4C1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.88■■■□□ 2.37
KDM3AQ9Y4C1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
KDM3AQ9Y4C1 ABHD17AP4-201ENST00000411545 909 ntBASIC29.87■■■□□ 2.37
KDM3AQ9Y4C1 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
KDM3AQ9Y4C1 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
KDM3AQ9Y4C1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
KDM3AQ9Y4C1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.86■■■□□ 2.37
KDM3AQ9Y4C1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.86■■■□□ 2.37
KDM3AQ9Y4C1 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
KDM3AQ9Y4C1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
KDM3AQ9Y4C1 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
KDM3AQ9Y4C1 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
KDM3AQ9Y4C1 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
KDM3AQ9Y4C1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
KDM3AQ9Y4C1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
KDM3AQ9Y4C1 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
KDM3AQ9Y4C1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
KDM3AQ9Y4C1 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.81■■■□□ 2.36
KDM3AQ9Y4C1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
KDM3AQ9Y4C1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
KDM3AQ9Y4C1 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
KDM3AQ9Y4C1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC29.77■■■□□ 2.36
KDM3AQ9Y4C1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
KDM3AQ9Y4C1 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
KDM3AQ9Y4C1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
KDM3AQ9Y4C1 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
KDM3AQ9Y4C1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.75■■■□□ 2.35
KDM3AQ9Y4C1 AL135925.1-201ENST00000605920 1701 ntBASIC29.74■■■□□ 2.35
KDM3AQ9Y4C1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
KDM3AQ9Y4C1 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.74■■■□□ 2.35
KDM3AQ9Y4C1 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
KDM3AQ9Y4C1 MIR7108-201ENST00000614319 87 ntBASIC29.73■■■□□ 2.35
KDM3AQ9Y4C1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.73■■■□□ 2.35
KDM3AQ9Y4C1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.72■■■□□ 2.35
KDM3AQ9Y4C1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
KDM3AQ9Y4C1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.72■■■□□ 2.35
KDM3AQ9Y4C1 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.72■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms