Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.65■■□□□ 1.54
UBQLN3Q9H347 DENR-202ENST00000455982 1052 ntTSL 5 BASIC24.64■■□□□ 1.54
UBQLN3Q9H347 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.64■■□□□ 1.53
UBQLN3Q9H347 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
UBQLN3Q9H347 AP006261.1-201ENST00000584783 668 ntBASIC24.63■■□□□ 1.53
UBQLN3Q9H347 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
UBQLN3Q9H347 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
UBQLN3Q9H347 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
UBQLN3Q9H347 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
UBQLN3Q9H347 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.6■■□□□ 1.53
UBQLN3Q9H347 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.6■■□□□ 1.53
UBQLN3Q9H347 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
UBQLN3Q9H347 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
UBQLN3Q9H347 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
UBQLN3Q9H347 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
UBQLN3Q9H347 AL162393.1-201ENST00000437852 946 ntBASIC24.58■■□□□ 1.53
UBQLN3Q9H347 MIR762-201ENST00000390236 83 ntBASIC24.57■■□□□ 1.52
UBQLN3Q9H347 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.57■■□□□ 1.52
UBQLN3Q9H347 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
UBQLN3Q9H347 CHML-205ENST00000638160 705 ntTSL 3 BASIC24.57■■□□□ 1.52
UBQLN3Q9H347 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.57■■□□□ 1.52
UBQLN3Q9H347 RPS2P35-201ENST00000443417 897 ntBASIC24.55■■□□□ 1.52
UBQLN3Q9H347 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.55■■□□□ 1.52
UBQLN3Q9H347 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
UBQLN3Q9H347 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.53■■□□□ 1.52
UBQLN3Q9H347 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
UBQLN3Q9H347 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
UBQLN3Q9H347 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.52■■□□□ 1.52
UBQLN3Q9H347 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
UBQLN3Q9H347 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
UBQLN3Q9H347 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
UBQLN3Q9H347 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
UBQLN3Q9H347 MIR3665-201ENST00000578708 105 ntBASIC24.5■■□□□ 1.51
UBQLN3Q9H347 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.5■■□□□ 1.51
UBQLN3Q9H347 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
UBQLN3Q9H347 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.49■■□□□ 1.51
UBQLN3Q9H347 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
UBQLN3Q9H347 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
UBQLN3Q9H347 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
UBQLN3Q9H347 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.48■■□□□ 1.51
UBQLN3Q9H347 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
UBQLN3Q9H347 ABCB10P3-201ENST00000561950 2166 ntBASIC24.48■■□□□ 1.51
UBQLN3Q9H347 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
UBQLN3Q9H347 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
UBQLN3Q9H347 DUX4L28-201ENST00000623687 678 ntBASIC24.47■■□□□ 1.51
UBQLN3Q9H347 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
UBQLN3Q9H347 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
UBQLN3Q9H347 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
UBQLN3Q9H347 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
UBQLN3Q9H347 AC005559.1-201ENST00000589661 871 ntBASIC24.46■■□□□ 1.51
UBQLN3Q9H347 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
UBQLN3Q9H347 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
UBQLN3Q9H347 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
UBQLN3Q9H347 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
UBQLN3Q9H347 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
UBQLN3Q9H347 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
UBQLN3Q9H347 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.45■■□□□ 1.5
UBQLN3Q9H347 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
UBQLN3Q9H347 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
UBQLN3Q9H347 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC24.43■■□□□ 1.5
UBQLN3Q9H347 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UBQLN3Q9H347 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
UBQLN3Q9H347 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.41■■□□□ 1.5
UBQLN3Q9H347 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
UBQLN3Q9H347 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
UBQLN3Q9H347 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
UBQLN3Q9H347 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
UBQLN3Q9H347 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
UBQLN3Q9H347 AC087741.3-201ENST00000624270 1347 ntBASIC24.38■■□□□ 1.49
UBQLN3Q9H347 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
UBQLN3Q9H347 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
UBQLN3Q9H347 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
UBQLN3Q9H347 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
UBQLN3Q9H347 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
UBQLN3Q9H347 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
UBQLN3Q9H347 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
UBQLN3Q9H347 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
UBQLN3Q9H347 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
UBQLN3Q9H347 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
UBQLN3Q9H347 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
UBQLN3Q9H347 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
UBQLN3Q9H347 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
UBQLN3Q9H347 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
UBQLN3Q9H347 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
UBQLN3Q9H347 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.35■■□□□ 1.49
UBQLN3Q9H347 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.34■■□□□ 1.49
UBQLN3Q9H347 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.34■■□□□ 1.49
UBQLN3Q9H347 AL161658.1-201ENST00000623641 1967 ntBASIC24.34■■□□□ 1.49
UBQLN3Q9H347 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
UBQLN3Q9H347 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
UBQLN3Q9H347 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UBQLN3Q9H347 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
UBQLN3Q9H347 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UBQLN3Q9H347 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UBQLN3Q9H347 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
UBQLN3Q9H347 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UBQLN3Q9H347 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBQLN3Q9H347 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBQLN3Q9H347 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBQLN3Q9H347 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms