Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HNRNPLP2-201ENST00000568980 1570 ntBASIC27.36■■□□□ 1.97
SHROOM3Q8TF72 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.36■■□□□ 1.97
SHROOM3Q8TF72 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.36■■□□□ 1.97
SHROOM3Q8TF72 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM3Q8TF72 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM3Q8TF72 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM3Q8TF72 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM3Q8TF72 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM3Q8TF72 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM3Q8TF72 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM3Q8TF72 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC27.34■■□□□ 1.97
SHROOM3Q8TF72 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM3Q8TF72 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM3Q8TF72 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM3Q8TF72 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.33■■□□□ 1.97
SHROOM3Q8TF72 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
SHROOM3Q8TF72 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM3Q8TF72 ABCB10P1-201ENST00000614297 2181 ntBASIC27.32■■□□□ 1.96
SHROOM3Q8TF72 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM3Q8TF72 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC27.31■■□□□ 1.96
SHROOM3Q8TF72 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM3Q8TF72 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM3Q8TF72 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM3Q8TF72 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
SHROOM3Q8TF72 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
SHROOM3Q8TF72 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHROOM3Q8TF72 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SHROOM3Q8TF72 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC27.26■■□□□ 1.96
SHROOM3Q8TF72 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
SHROOM3Q8TF72 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM3Q8TF72 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM3Q8TF72 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM3Q8TF72 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.25■■□□□ 1.95
SHROOM3Q8TF72 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM3Q8TF72 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
SHROOM3Q8TF72 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM3Q8TF72 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM3Q8TF72 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC27.2■■□□□ 1.94
SHROOM3Q8TF72 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 AL135925.1-201ENST00000605920 1701 ntBASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 RPS2-209ENST00000529806 993 ntTSL 3 BASIC27.17■■□□□ 1.94
SHROOM3Q8TF72 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM3Q8TF72 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
SHROOM3Q8TF72 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM3Q8TF72 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.14■■□□□ 1.94
SHROOM3Q8TF72 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM3Q8TF72 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
SHROOM3Q8TF72 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM3Q8TF72 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM3Q8TF72 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27.12■■□□□ 1.93
SHROOM3Q8TF72 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.12■■□□□ 1.93
SHROOM3Q8TF72 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC27.12■■□□□ 1.93
SHROOM3Q8TF72 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM3Q8TF72 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM3Q8TF72 AC005559.1-201ENST00000589661 871 ntBASIC27.11■■□□□ 1.93
SHROOM3Q8TF72 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
SHROOM3Q8TF72 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM3Q8TF72 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM3Q8TF72 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.1■■□□□ 1.93
SHROOM3Q8TF72 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM3Q8TF72 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
SHROOM3Q8TF72 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM3Q8TF72 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
SHROOM3Q8TF72 ST7-AS1-201ENST00000456775 1889 ntBASIC27.09■■□□□ 1.93
SHROOM3Q8TF72 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC27.09■■□□□ 1.93
SHROOM3Q8TF72 AL162393.1-201ENST00000437852 946 ntBASIC27.09■■□□□ 1.93
SHROOM3Q8TF72 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC27.08■■□□□ 1.93
SHROOM3Q8TF72 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM3Q8TF72 MIR762-201ENST00000390236 83 ntBASIC27.08■■□□□ 1.92
SHROOM3Q8TF72 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.92
SHROOM3Q8TF72 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM3Q8TF72 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM3Q8TF72 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM3Q8TF72 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM3Q8TF72 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM3Q8TF72 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM3Q8TF72 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC27.05■■□□□ 1.92
SHROOM3Q8TF72 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM3Q8TF72 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM3Q8TF72 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM3Q8TF72 DUX4L28-201ENST00000623687 678 ntBASIC27.04■■□□□ 1.92
SHROOM3Q8TF72 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.03■■□□□ 1.92
SHROOM3Q8TF72 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM3Q8TF72 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM3Q8TF72 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 AC010864.1-201ENST00000609407 1511 ntBASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 HLA-V-202ENST00000446817 847 ntBASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC27.02■■□□□ 1.92
SHROOM3Q8TF72 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM3Q8TF72 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM3Q8TF72 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms