Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13DQ5THJ4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13DQ5THJ4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
VPS13DQ5THJ4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13DQ5THJ4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS13DQ5THJ4 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13DQ5THJ4 AC016575.1-201ENST00000607026 382 ntBASIC18.43■□□□□ 0.54
VPS13DQ5THJ4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13DQ5THJ4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS13DQ5THJ4 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13DQ5THJ4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13DQ5THJ4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS13DQ5THJ4 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VPS13DQ5THJ4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13DQ5THJ4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VPS13DQ5THJ4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS13DQ5THJ4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13DQ5THJ4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
VPS13DQ5THJ4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS13DQ5THJ4 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13DQ5THJ4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.4■□□□□ 0.54
VPS13DQ5THJ4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS13DQ5THJ4 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
VPS13DQ5THJ4 LINC01971-201ENST00000617888 1048 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L13-201ENST00000554103 1267 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L15-201ENST00000611059 1267 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L23-201ENST00000615195 1269 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L24-201ENST00000617576 1269 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L22-201ENST00000618238 1269 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L20-201ENST00000619712 1269 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L21-201ENST00000622058 1269 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L10-201ENST00000622460 1267 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 DUX4L25-201ENST00000624915 1269 ntBASIC18.37■□□□□ 0.53
VPS13DQ5THJ4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC18.36■□□□□ 0.53
VPS13DQ5THJ4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13DQ5THJ4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13DQ5THJ4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.36■□□□□ 0.53
VPS13DQ5THJ4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS13DQ5THJ4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13DQ5THJ4 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS13DQ5THJ4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS13DQ5THJ4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS13DQ5THJ4 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VPS13DQ5THJ4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13DQ5THJ4 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13DQ5THJ4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS13DQ5THJ4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS13DQ5THJ4 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS13DQ5THJ4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS13DQ5THJ4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS13DQ5THJ4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS13DQ5THJ4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13DQ5THJ4 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS13DQ5THJ4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS13DQ5THJ4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS13DQ5THJ4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS13DQ5THJ4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS13DQ5THJ4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS13DQ5THJ4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS13DQ5THJ4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS13DQ5THJ4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
VPS13DQ5THJ4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS13DQ5THJ4 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13DQ5THJ4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS13DQ5THJ4 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VPS13DQ5THJ4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS13DQ5THJ4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS13DQ5THJ4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS13DQ5THJ4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS13DQ5THJ4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VPS13DQ5THJ4 DUX4L11-201ENST00000611504 1267 ntBASIC18.27■□□□□ 0.52
VPS13DQ5THJ4 DUX4L12-201ENST00000614593 1267 ntBASIC18.27■□□□□ 0.52
VPS13DQ5THJ4 DUX4L14-201ENST00000621227 1267 ntBASIC18.27■□□□□ 0.52
VPS13DQ5THJ4 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS13DQ5THJ4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13DQ5THJ4 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13DQ5THJ4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS13DQ5THJ4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13DQ5THJ4 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS13DQ5THJ4 AC108673.1-201ENST00000510422 1159 ntBASIC18.24■□□□□ 0.51
VPS13DQ5THJ4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13DQ5THJ4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13DQ5THJ4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VPS13DQ5THJ4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS13DQ5THJ4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS13DQ5THJ4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13DQ5THJ4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13DQ5THJ4 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.22■□□□□ 0.51
VPS13DQ5THJ4 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13DQ5THJ4 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13DQ5THJ4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13DQ5THJ4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS13DQ5THJ4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS13DQ5THJ4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS13DQ5THJ4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS13DQ5THJ4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13DQ5THJ4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS13DQ5THJ4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13DQ5THJ4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms