Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 RPL23A-207ENST00000578181 593 ntTSL 25.43□□□□□ -1.547e-41■■■■■ 46.7
SMNDC1O75940 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.781e-9■■■■■ 46.7
SMNDC1O75940 DEAF1-207ENST00000527170 1623 ntTSL 1 (best)15.1■□□□□ 0.011e-9■■■■■ 46.7
SMNDC1O75940 DEAF1-212ENST00000530813 668 ntTSL 511.57□□□□□ -0.561e-9■■■■■ 46.7
SMNDC1O75940 DEAF1-204ENST00000525904 797 ntTSL 311.57□□□□□ -0.561e-9■■■■■ 46.7
SMNDC1O75940 CWF19L1-206ENST00000478047 2694 ntTSL 211.94□□□□□ -0.55e-62■■■■■ 46.5
SMNDC1O75940 CWF19L1-204ENST00000468709 2402 ntTSL 29.1□□□□□ -0.955e-62■■■■■ 46.5
SMNDC1O75940 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.015e-62■■■■■ 46.5
SMNDC1O75940 CWF19L1-207ENST00000482452 1606 ntTSL 57.39□□□□□ -1.235e-62■■■■■ 46.5
SMNDC1O75940 GAS5-216ENST00000443799 897 ntTSL 58.51□□□□□ -1.056e-39■■■■■ 45.9
SMNDC1O75940 GAS5-203ENST00000416952 799 ntTSL 29.66□□□□□ -0.865e-39■■■■■ 45.8
SMNDC1O75940 GAS5-226ENST00000455838 632 ntTSL 27.65□□□□□ -1.185e-39■■■■■ 45.8
SMNDC1O75940 GAS5-211ENST00000432536 959 ntTSL 2 BASIC7.32□□□□□ -1.245e-39■■■■■ 45.8
SMNDC1O75940 GAS5-227ENST00000456293 583 ntTSL 36.46□□□□□ -1.385e-39■■■■■ 45.8
SMNDC1O75940 PPAN-206ENST00000466025 523 ntTSL 216.12■□□□□ 0.172e-21■■■■■ 45.7
SMNDC1O75940 SNORD105B-201ENST00000458770 79 ntBASIC3.24□□□□□ -1.892e-21■■■■■ 45.7
SMNDC1O75940 TBRG4-214ENST00000488222 972 ntTSL 315.55■□□□□ 0.083e-15■■■■■ 44.6
SMNDC1O75940 TBRG4-213ENST00000484326 835 ntTSL 213.86□□□□□ -0.193e-15■■■■■ 44.6
SMNDC1O75940 TMEM39A-201ENST00000319172 4369 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.953e-7■■■■■ 44.6
SMNDC1O75940 TMEM39A-202ENST00000438581 4393 ntTSL 1 (best)8.08□□□□□ -1.123e-7■■■■■ 44.6
SMNDC1O75940 TMEM39A-206ENST00000473684 3043 ntTSL 55.75□□□□□ -1.493e-7■■■■■ 44.6
SMNDC1O75940 WSB1-202ENST00000348811 1611 ntTSL 1 (best) BASIC11.37□□□□□ -0.592e-30■■■■■ 44.5
SMNDC1O75940 WSB1-201ENST00000262394 5139 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.72e-30■■■■■ 44.5
SMNDC1O75940 WSB1-204ENST00000467843 4187 ntTSL 1 (best)9.13□□□□□ -0.952e-30■■■■■ 44.5
SMNDC1O75940 RPL23A-205ENST00000472628 639 ntTSL 1 (best) BASIC9.87□□□□□ -0.836e-41■■■■■ 44.3
SMNDC1O75940 GAS5-215ENST00000442067 1114 ntTSL 26.07□□□□□ -1.445e-39■■■■■ 44.1
SMNDC1O75940 GAS5-205ENST00000422008 497 ntTSL 34.33□□□□□ -1.725e-39■■■■■ 44.1
SMNDC1O75940 SGSM3-203ENST00000427834 793 ntTSL 217.23■□□□□ 0.352e-16■■■■■ 44.1
SMNDC1O75940 SGSM3-207ENST00000469719 1029 ntTSL 513.89□□□□□ -0.192e-16■■■■■ 44.1
SMNDC1O75940 SNORD14B-201ENST00000364533 90 ntBASIC4.74□□□□□ -1.652e-35■■■■■ 43.9
SMNDC1O75940 MED24-208ENST00000479829 733 ntTSL 520.99■□□□□ 0.952e-24■■■■■ 43.8
SMNDC1O75940 MED24-221ENST00000580008 957 ntTSL 1 (best)16.62■□□□□ 0.252e-24■■■■■ 43.8
SMNDC1O75940 MED24-206ENST00000428757 1105 ntTSL 514.44□□□□□ -0.12e-24■■■■■ 43.8
SMNDC1O75940 MED24-233ENST00000585306 597 ntTSL 413.81□□□□□ -0.22e-24■■■■■ 43.8
SMNDC1O75940 MED24-216ENST00000543759 628 ntTSL 410.35□□□□□ -0.752e-24■■■■■ 43.8
SMNDC1O75940 MED24-229ENST00000582023 592 ntTSL 49.59□□□□□ -0.872e-24■■■■■ 43.8
SMNDC1O75940 MED24-223ENST00000580517 567 ntTSL 47.28□□□□□ -1.242e-24■■■■■ 43.8
SMNDC1O75940 MED24-215ENST00000537674 548 ntTSL 37.27□□□□□ -1.252e-24■■■■■ 43.8
SMNDC1O75940 MED24-218ENST00000578161 580 ntTSL 35.53□□□□□ -1.522e-24■■■■■ 43.8
SMNDC1O75940 RNU6-3P-201ENST00000384314 107 ntBASIC4.85□□□□□ -1.632e-24■■■■■ 43.8
SMNDC1O75940 SNORD42A-201ENST00000459584 64 ntBASIC6.87□□□□□ -1.312e-40■■■■■ 43.7
SMNDC1O75940 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC13.93□□□□□ -0.186e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.54□□□□□ -0.246e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-210ENST00000498479 5746 ntTSL 212.37□□□□□ -0.436e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-202ENST00000357244 3991 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.666e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.726e-51■■■■■ 43.5
SMNDC1O75940 SNORD90-201ENST00000391145 111 ntBASIC1.86□□□□□ -2.116e-51■■■■■ 43.5
SMNDC1O75940 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.712e-9■■■■■ 43.4
SMNDC1O75940 DCBLD2-202ENST00000326857 3959 ntTSL 1 (best) BASIC12.22□□□□□ -0.452e-9■■■■■ 43.4
SMNDC1O75940 AC017104.5-201ENST00000637647 639 ntBASIC8.91□□□□□ -0.982e-9■■■■■ 43.4
SMNDC1O75940 DCBLD2-209ENST00000494614 727 ntTSL 37.01□□□□□ -1.292e-9■■■■■ 43.4
SMNDC1O75940 RNU6-26P-201ENST00000383985 107 ntBASIC5.65□□□□□ -1.52e-9■■■■■ 43.4
SMNDC1O75940 RNU2-22P-201ENST00000411266 212 ntBASIC5.58□□□□□ -1.522e-9■■■■■ 43.4
SMNDC1O75940 DHX38-207ENST00000566329 683 ntTSL 215.6■□□□□ 0.092e-9■■■■■ 43.3
SMNDC1O75940 DHX38-212ENST00000569935 907 ntTSL 214.12□□□□□ -0.152e-9■■■■■ 43.3
SMNDC1O75940 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.32□□□□□ -0.286e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.346e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-201ENST00000355731 587 ntTSL 59.79□□□□□ -0.846e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-202ENST00000394935 580 ntTSL 38.81□□□□□ -16e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC6.95□□□□□ -1.36e-41■■■■■ 43.1
SMNDC1O75940 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.72■□□□□ 0.274e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.47■□□□□ 0.234e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.144e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.014e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-204ENST00000461363 856 ntTSL 213.86□□□□□ -0.194e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-209ENST00000478532 945 ntTSL 511.6□□□□□ -0.554e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-217ENST00000495973 3409 ntTSL 1 (best)11.25□□□□□ -0.614e-13■■■■■ 42.8
SMNDC1O75940 ATG16L1-208ENST00000419681 644 ntTSL 514.56□□□□□ -0.081e-27■■■■■ 42.7
SMNDC1O75940 ATG16L1-217ENST00000492298 591 ntTSL 59.59□□□□□ -0.871e-27■■■■■ 42.7
SMNDC1O75940 SCARNA5-201ENST00000516201 276 ntBASIC5.76□□□□□ -1.491e-27■■■■■ 42.7
SMNDC1O75940 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.242e-7■■■■■ 42.6
SMNDC1O75940 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.76■□□□□ 0.271e-61■■■■■ 42.5
SMNDC1O75940 TERC-201ENST00000602385 541 ntBASIC15.52■□□□□ 0.081e-61■■■■■ 42.5
SMNDC1O75940 SRP68-211ENST00000592704 1941 ntTSL 225.8■■□□□ 1.722e-11■■■■■ 42.4
SMNDC1O75940 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.372e-11■■■■■ 42.4
SMNDC1O75940 TTC3-223ENST00000492275 769 ntTSL 323■■□□□ 1.271e-23■■■■■ 42.4
SMNDC1O75940 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.94■■□□□ 1.262e-11■■■■■ 42.4
SMNDC1O75940 TTC3-210ENST00000450533 2451 ntTSL 1 (best)22.75■■□□□ 1.231e-23■■■■■ 42.4
SMNDC1O75940 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.64■■□□□ 1.221e-23■■■■■ 42.4
SMNDC1O75940 TTC3-212ENST00000463216 842 ntTSL 521.79■■□□□ 1.081e-23■■■■■ 42.4
SMNDC1O75940 TTC3-224ENST00000494243 861 ntTSL 521.54■■□□□ 1.041e-23■■■■■ 42.4
SMNDC1O75940 TTC3-217ENST00000481605 1540 ntTSL 521.16■□□□□ 0.981e-23■■■■■ 42.4
SMNDC1O75940 TTC3-209ENST00000438055 3606 ntTSL 517.18■□□□□ 0.341e-23■■■■■ 42.4
SMNDC1O75940 TTC3-207ENST00000418766 3771 ntTSL 516.98■□□□□ 0.311e-23■■■■■ 42.4
SMNDC1O75940 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.32■□□□□ 0.21e-23■■■■■ 42.4
SMNDC1O75940 TTC3-219ENST00000485402 3626 ntTSL 515.7■□□□□ 0.11e-23■■■■■ 42.4
SMNDC1O75940 SRP68-212ENST00000602720 2037 ntTSL 2 BASIC12.88□□□□□ -0.352e-11■■■■■ 42.4
SMNDC1O75940 SRP68-205ENST00000586859 703 ntTSL 312.8□□□□□ -0.362e-11■■■■■ 42.4
SMNDC1O75940 TTC3-218ENST00000484047 1945 ntTSL 211.92□□□□□ -0.51e-23■■■■■ 42.4
SMNDC1O75940 SRP68-203ENST00000542536 1714 ntTSL 211.69□□□□□ -0.542e-11■■■■■ 42.4
SMNDC1O75940 SRP68-208ENST00000588736 2532 ntTSL 210.06□□□□□ -0.82e-11■■■■■ 42.4
SMNDC1O75940 TTC3-202ENST00000355666 7712 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.871e-23■■■■■ 42.4
SMNDC1O75940 TTC3-216ENST00000479930 8998 ntTSL 1 (best)9.18□□□□□ -0.941e-23■■■■■ 42.4
SMNDC1O75940 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.341e-23■■■■■ 42.4
SMNDC1O75940 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.61e-23■■■■■ 42.4
SMNDC1O75940 ZNF692-211ENST00000477070 1521 ntTSL 518.48■□□□□ 0.551e-19■■■■■ 42
SMNDC1O75940 ZNF692-207ENST00000468455 644 ntTSL 516.13■□□□□ 0.173e-14■■■■■ 42
SMNDC1O75940 PIK3C2A-203ENST00000531428 1593 ntTSL 1 (best)14.42□□□□□ -0.11e-9■■■■■ 42
SMNDC1O75940 ZNF692-216ENST00000491971 805 ntTSL 211.04□□□□□ -0.643e-14■■■■■ 42
SMNDC1O75940 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.391e-9■■■■■ 42
Retrieved 100 of 11,362 protein–RNA pairs in 287.8 ms