RNA–Protein interactions for RNA: ENST00000485402.5

TTC3-219, Transcript of tetratricopeptide repeat domain 3, humanhuman

TSL 5

Gene TTC3, Length 3,626 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3-219ENST00000485402 NISCHQ9Y2I1 1504 aa31.74■■■□□ 2.67
TTC3-219ENST00000485402 CCDC180Q9P1Z9 1646 aa27.45■■□□□ 1.98
TTC3-219ENST00000485402 DCAF8L2P0C7V8 631 aa26.8■■□□□ 1.88
TTC3-219ENST00000485402 ZCCHC6Q5VYS8 1495 aaKnown RBP26.61■■□□□ 1.85
TTC3-219ENST00000485402 ABCC9O60706 1549 aa26.4■■□□□ 1.82
TTC3-219ENST00000485402 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
TTC3-219ENST00000485402 DCAF1Q9Y4B6 1507 aa26.03■■□□□ 1.76
TTC3-219ENST00000485402 MYO15BQ96JP2 1530 aa25.68■■□□□ 1.7
TTC3-219ENST00000485402 NACADO15069 1562 aa25.67■■□□□ 1.7
TTC3-219ENST00000485402 SCRIBQ14160 1630 aa25.57■■□□□ 1.68
TTC3-219ENST00000485402 RB1CC1Q8TDY2 1594 aa25.51■■□□□ 1.67
TTC3-219ENST00000485402 SUPT5HO00267 1087 aaKnown RBP25.41■■□□□ 1.66
TTC3-219ENST00000485402 PABPN1Q86U42 306 aaKnown RBP eCLIP25.06■■□□□ 1.6
TTC3-219ENST00000485402 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.58
TTC3-219ENST00000485402 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
TTC3-219ENST00000485402 BICRAQ9NZM4 1560 aa24.73■■□□□ 1.55
TTC3-219ENST00000485402 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
TTC3-219ENST00000485402 MROH2BQ7Z745 1585 aa24.6■■□□□ 1.53
TTC3-219ENST00000485402 PCGF6Q9BYE7 350 aa24.57■■□□□ 1.52
TTC3-219ENST00000485402 HRCP23327 699 aa24.56■■□□□ 1.52
TTC3-219ENST00000485402 BAZ1AQ9NRL2 1556 aaPredicted RBP24.48■■□□□ 1.51
TTC3-219ENST00000485402 WIZO95785 1651 aa24.4■■□□□ 1.5
TTC3-219ENST00000485402 CHIC1Q5VXU3 224 aa24.4■■□□□ 1.5
TTC3-219ENST00000485402 PPARGC1BQ86YN6 1023 aaKnown RBP24.37■■□□□ 1.49
TTC3-219ENST00000485402 SMARCA4P51532 1647 aa24.37■■□□□ 1.49
TTC3-219ENST00000485402 LOC105371045A0A1W2PR82 267 aa24.05■■□□□ 1.44
TTC3-219ENST00000485402 EIF4G1Q04637 1599 aaKnown RBP24.04■■□□□ 1.44
TTC3-219ENST00000485402 ATAD2BQ9ULI0 1458 aa24.03■■□□□ 1.44
TTC3-219ENST00000485402 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
TTC3-219ENST00000485402 BAZ1BQ9UIG0 1483 aaKnown RBP23.94■■□□□ 1.42
TTC3-219ENST00000485402 SMARCA2P51531 1590 aa23.94■■□□□ 1.42
TTC3-219ENST00000485402 PEG3Q9GZU2 1588 aa23.93■■□□□ 1.42
TTC3-219ENST00000485402 CCDC88BA6NC98 1476 aa23.92■■□□□ 1.42
TTC3-219ENST00000485402 TRIM41Q8WV44 630 aa23.77■■□□□ 1.4
TTC3-219ENST00000485402 NCAPD3P42695 1498 aa23.76■■□□□ 1.39
TTC3-219ENST00000485402 CC2D2AQ9P2K1 1620 aa23.72■■□□□ 1.39
TTC3-219ENST00000485402 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
TTC3-219ENST00000485402 EHMT2Q96KQ7 1210 aa23.61■■□□□ 1.37
TTC3-219ENST00000485402 TRIM26Q12899 539 aaPredicted RBP23.61■■□□□ 1.37
TTC3-219ENST00000485402 FAM9AQ8IZU1 332 aaPredicted RBP23.53■■□□□ 1.36
TTC3-219ENST00000485402 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
TTC3-219ENST00000485402 DNAJC5BQ9UF47 199 aa23.42■■□□□ 1.34
TTC3-219ENST00000485402 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
TTC3-219ENST00000485402 CFTRP13569 1480 aa23.26■■□□□ 1.31
TTC3-219ENST00000485402 CADPSQ9ULU8 1353 aa23.26■■□□□ 1.31
TTC3-219ENST00000485402 ZEB1P37275 1124 aaPredicted RBP23.2■■□□□ 1.31
TTC3-219ENST00000485402 NESP48681 1621 aa23.15■■□□□ 1.3
TTC3-219ENST00000485402 SYNJ1O43426 1573 aa23.13■■□□□ 1.29
TTC3-219ENST00000485402 SCAF1Q9H7N4 1312 aaKnown RBP23.11■■□□□ 1.29
TTC3-219ENST00000485402 SOGA1O94964 1423 aa23.09■■□□□ 1.29
TTC3-219ENST00000485402 FANCD2Q9BXW9 1451 aa23.01■■□□□ 1.27
TTC3-219ENST00000485402 RUSC2Q8N2Y8 1516 aa23.01■■□□□ 1.27
TTC3-219ENST00000485402 PELP1Q8IZL8 1130 aaKnown RBP22.99■■□□□ 1.27
TTC3-219ENST00000485402 CUX1P39880 1505 aa22.97■■□□□ 1.27
TTC3-219ENST00000485402 TOP2BQ02880 1626 aa22.95■■□□□ 1.26
TTC3-219ENST00000485402 CSRNP3Q8WYN3 585 aa22.95■■□□□ 1.26
TTC3-219ENST00000485402 PRDM2Q13029 1718 aa22.93■■□□□ 1.26
TTC3-219ENST00000485402 TTBK1Q5TCY1 1321 aaPredicted RBP22.92■■□□□ 1.26
TTC3-219ENST00000485402 LAMC3Q9Y6N6 1575 aa22.91■■□□□ 1.26
TTC3-219ENST00000485402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.9■■□□□ 1.26
TTC3-219ENST00000485402 PDS5BQ9NTI5 1447 aa22.87■■□□□ 1.25
TTC3-219ENST00000485402 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
TTC3-219ENST00000485402 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
TTC3-219ENST00000485402 CCER1Q8TC90 406 aaPredicted RBP22.84■■□□□ 1.25
TTC3-219ENST00000485402 UBTFP17480 764 aaKnown RBP22.83■■□□□ 1.24
TTC3-219ENST00000485402 EEA1Q15075 1411 aa22.83■■□□□ 1.24
TTC3-219ENST00000485402 FGD5Q6ZNL6 1462 aa22.77■■□□□ 1.24
TTC3-219ENST00000485402 TOPBP1Q92547 1522 aa22.72■■□□□ 1.23
TTC3-219ENST00000485402 KIF21AQ7Z4S6 1674 aa22.7■■□□□ 1.23
TTC3-219ENST00000485402 KIF27Q86VH2 1401 aa22.69■■□□□ 1.22
TTC3-219ENST00000485402 URB2Q14146 1524 aaKnown RBP22.69■■□□□ 1.22
TTC3-219ENST00000485402 CUX2O14529 1486 aa22.69■■□□□ 1.22
TTC3-219ENST00000485402 DNMBPQ6XZF7 1577 aa22.68■■□□□ 1.22
TTC3-219ENST00000485402 NEUROD1Q13562 356 aa22.68■■□□□ 1.22
TTC3-219ENST00000485402 RAD54L2Q9Y4B4 1467 aa22.67■■□□□ 1.22
TTC3-219ENST00000485402 RANGAP1P46060 587 aaPredicted RBP22.66■■□□□ 1.22
TTC3-219ENST00000485402 POLA1P09884 1462 aaPredicted RBP22.64■■□□□ 1.21
TTC3-219ENST00000485402 ACIN1Q9UKV3 1341 aaKnown RBP22.63■■□□□ 1.21
TTC3-219ENST00000485402 ERCC6Q03468 1493 aa22.62■■□□□ 1.21
TTC3-219ENST00000485402 GOLGA3Q08378 1498 aa22.61■■□□□ 1.21
TTC3-219ENST00000485402 GTF3C3Q9Y5Q9 886 aa22.59■■□□□ 1.21
TTC3-219ENST00000485402 RAPGEF2Q9Y4G8 1499 aa22.58■■□□□ 1.2
TTC3-219ENST00000485402 DIEXFQ68CQ4 756 aaKnown RBP22.57■■□□□ 1.2
TTC3-219ENST00000485402 TNIKQ9UKE5 1360 aa22.55■■□□□ 1.2
TTC3-219ENST00000485402 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
TTC3-219ENST00000485402 MRC2Q9UBG0 1479 aa22.52■■□□□ 1.2
TTC3-219ENST00000485402 IGF1RP08069 1367 aa22.51■■□□□ 1.19
TTC3-219ENST00000485402 CEP162Q5TB80 1403 aa22.5■■□□□ 1.19
TTC3-219ENST00000485402 KIF21BO75037 1637 aa22.49■■□□□ 1.19
TTC3-219ENST00000485402 CENPBP07199 599 aaPredicted RBP22.49■■□□□ 1.19
TTC3-219ENST00000485402 ABCA10Q8WWZ4 1543 aa22.46■■□□□ 1.19
TTC3-219ENST00000485402 YTHDC1Q96MU7 727 aaKnown RBP22.46■■□□□ 1.19
TTC3-219ENST00000485402 PRXQ9BXM0 1461 aa22.46■■□□□ 1.19
TTC3-219ENST00000485402 CARMIL1Q5VZK9 1371 aa22.44■■□□□ 1.18
TTC3-219ENST00000485402 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
TTC3-219ENST00000485402 CLIP1P30622 1438 aa22.34■■□□□ 1.17
TTC3-219ENST00000485402 ERICH3Q5RHP9 1530 aa22.34■■□□□ 1.17
TTC3-219ENST00000485402 AQRO60306 1485 aaKnown RBP eCLIP22.33■■□□□ 1.172e-7■■■□□ 15.5
TTC3-219ENST00000485402 WDR62O43379 1518 aa22.32■■□□□ 1.16
TTC3-219ENST00000485402 TARBP1Q13395 1621 aaKnown RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms