RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 NISCHQ9Y2I1 1504 aa15.26■□□□□ 0.03
TMEM39A-202ENST00000438581 DCAF8L2P0C7V8 631 aa14.82□□□□□ -0.04
TMEM39A-202ENST00000438581 MYT1Q01538 1121 aa14.2□□□□□ -0.14
TMEM39A-202ENST00000438581 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
TMEM39A-202ENST00000438581 SUPT5HO00267 1087 aaKnown RBP14□□□□□ -0.17
TMEM39A-202ENST00000438581 PELP1Q8IZL8 1130 aaKnown RBP13.9□□□□□ -0.18
TMEM39A-202ENST00000438581 TTBK1Q5TCY1 1321 aaPredicted RBP13.82□□□□□ -0.2
TMEM39A-202ENST00000438581 SLC24A1O60721 1099 aa13.39□□□□□ -0.27
TMEM39A-202ENST00000438581 EHMT2Q96KQ7 1210 aa13.35□□□□□ -0.27
TMEM39A-202ENST00000438581 FAM9AQ8IZU1 332 aaPredicted RBP13.14□□□□□ -0.31
TMEM39A-202ENST00000438581 ABCC9O60706 1549 aa13.11□□□□□ -0.31
TMEM39A-202ENST00000438581 ERICH6Q7L0X2 663 aa13.09□□□□□ -0.31
TMEM39A-202ENST00000438581 TRIM41Q8WV44 630 aa12.95□□□□□ -0.34
TMEM39A-202ENST00000438581 PABPN1Q86U42 306 aaKnown RBP eCLIP12.87□□□□□ -0.35
TMEM39A-202ENST00000438581 RANGAP1P46060 587 aaPredicted RBP12.82□□□□□ -0.36
TMEM39A-202ENST00000438581 APLP2Q06481 763 aa12.74□□□□□ -0.37
TMEM39A-202ENST00000438581 PCGF6Q9BYE7 350 aa12.69□□□□□ -0.38
TMEM39A-202ENST00000438581 DAXXQ9UER7 740 aaPredicted RBP12.69□□□□□ -0.38
TMEM39A-202ENST00000438581 CHIC1Q5VXU3 224 aa12.69□□□□□ -0.38
TMEM39A-202ENST00000438581 UBTFP17480 764 aaKnown RBP12.68□□□□□ -0.38
TMEM39A-202ENST00000438581 ZCCHC6Q5VYS8 1495 aaKnown RBP12.65□□□□□ -0.38
TMEM39A-202ENST00000438581 CCDC180Q9P1Z9 1646 aa12.64□□□□□ -0.39
TMEM39A-202ENST00000438581 LOC105371045A0A1W2PR82 267 aa12.6□□□□□ -0.39
TMEM39A-202ENST00000438581 ATP1B4Q9UN42 357 aaPredicted RBP12.56□□□□□ -0.4
TMEM39A-202ENST00000438581 PPARGC1BQ86YN6 1023 aaKnown RBP12.55□□□□□ -0.4
TMEM39A-202ENST00000438581 SCRIBQ14160 1630 aa12.52□□□□□ -0.4
TMEM39A-202ENST00000438581 CCER1Q8TC90 406 aaPredicted RBP12.32□□□□□ -0.44
TMEM39A-202ENST00000438581 RB1CC1Q8TDY2 1594 aa12.25□□□□□ -0.45
TMEM39A-202ENST00000438581 TRIM26Q12899 539 aaPredicted RBP12.23□□□□□ -0.45
TMEM39A-202ENST00000438581 ITGAEP38570 1179 aa12.2□□□□□ -0.46
TMEM39A-202ENST00000438581 NACADO15069 1562 aa12.19□□□□□ -0.46
TMEM39A-202ENST00000438581 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.19□□□□□ -0.46
TMEM39A-202ENST00000438581 HNRNPUL2Q1KMD3 747 aaKnown RBP12.19□□□□□ -0.46
TMEM39A-202ENST00000438581 PRKCSHP14314 528 aaPredicted RBP12.16□□□□□ -0.46
TMEM39A-202ENST00000438581 RSF1Q96T23 1441 aaPredicted RBP12.14□□□□□ -0.47
TMEM39A-202ENST00000438581 ZEB1P37275 1124 aaPredicted RBP12.13□□□□□ -0.47
TMEM39A-202ENST00000438581 DCAF1Q9Y4B6 1507 aa12.1□□□□□ -0.47
TMEM39A-202ENST00000438581 CSRNP3Q8WYN3 585 aa12.09□□□□□ -0.47
TMEM39A-202ENST00000438581 CECR2Q9BXF3 1484 aa12.06□□□□□ -0.48
TMEM39A-202ENST00000438581 FBLN2P98095 1184 aa12.06□□□□□ -0.48
TMEM39A-202ENST00000438581 NCBP3Q53F19 620 aaKnown RBP12.03□□□□□ -0.48
TMEM39A-202ENST00000438581 P3H3Q8IVL6 736 aa12.01□□□□□ -0.49
TMEM39A-202ENST00000438581 HRCP23327 699 aa11.98□□□□□ -0.49
TMEM39A-202ENST00000438581 MYT1LQ9UL68 1186 aa11.96□□□□□ -0.49
TMEM39A-202ENST00000438581 FAM50AQ14320 339 aaKnown RBP11.93□□□□□ -0.5
TMEM39A-202ENST00000438581 ARXQ96QS3 562 aa11.93□□□□□ -0.5
TMEM39A-202ENST00000438581 ARID3CA6NKF2 412 aa11.93□□□□□ -0.5
TMEM39A-202ENST00000438581 BAZ1BQ9UIG0 1483 aaKnown RBP11.9□□□□□ -0.5
TMEM39A-202ENST00000438581 BAZ1AQ9NRL2 1556 aaPredicted RBP11.89□□□□□ -0.51
TMEM39A-202ENST00000438581 EIF5BO60841 1220 aaKnown RBP11.89□□□□□ -0.51
TMEM39A-202ENST00000438581 MROH2BQ7Z745 1585 aa11.87□□□□□ -0.51
TMEM39A-202ENST00000438581 MYO15BQ96JP2 1530 aa11.86□□□□□ -0.51
TMEM39A-202ENST00000438581 YTHDC1Q96MU7 727 aaKnown RBP11.82□□□□□ -0.52
TMEM39A-202ENST00000438581 WRNQ14191 1432 aaPredicted RBP eCLIP11.79□□□□□ -0.52
TMEM39A-202ENST00000438581 TRIM52Q96A61 297 aa11.76□□□□□ -0.53
TMEM39A-202ENST00000438581 CENPBP07199 599 aaPredicted RBP11.76□□□□□ -0.53
TMEM39A-202ENST00000438581 POLR3GLQ9BT43 218 aa11.76□□□□□ -0.53
TMEM39A-202ENST00000438581 NEUROD1Q13562 356 aa11.73□□□□□ -0.53
TMEM39A-202ENST00000438581 CCDC88BA6NC98 1476 aa11.72□□□□□ -0.53
TMEM39A-202ENST00000438581 CNGB1Q14028 1251 aaPredicted RBP11.72□□□□□ -0.53
TMEM39A-202ENST00000438581 WIZO95785 1651 aa11.71□□□□□ -0.54
TMEM39A-202ENST00000438581 AMER1Q5JTC6 1135 aaPredicted RBP11.7□□□□□ -0.54
TMEM39A-202ENST00000438581 ZNF777Q9ULD5 760 aaPredicted RBP11.69□□□□□ -0.54
TMEM39A-202ENST00000438581 CHMP7Q8WUX9 453 aaPredicted RBP11.67□□□□□ -0.54
TMEM39A-202ENST00000438581 BCL11AQ9H165 835 aa11.66□□□□□ -0.54
TMEM39A-202ENST00000438581 CLIP1P30622 1438 aa11.65□□□□□ -0.54
TMEM39A-202ENST00000438581 SOGA1O94964 1423 aa11.63□□□□□ -0.55
TMEM39A-202ENST00000438581 ABCC8Q09428 1581 aa11.63□□□□□ -0.55
TMEM39A-202ENST00000438581 EEA1Q15075 1411 aa11.62□□□□□ -0.55
TMEM39A-202ENST00000438581 CDK11AQ9UQ88 783 aaPredicted RBP11.62□□□□□ -0.55
TMEM39A-202ENST00000438581 SMARCA2P51531 1590 aa11.61□□□□□ -0.55
TMEM39A-202ENST00000438581 KIF27Q86VH2 1401 aa11.61□□□□□ -0.55
TMEM39A-202ENST00000438581 CEP162Q5TB80 1403 aa11.61□□□□□ -0.55
TMEM39A-202ENST00000438581 GOLGA3Q08378 1498 aa11.6□□□□□ -0.55
TMEM39A-202ENST00000438581 ATAD2BQ9ULI0 1458 aa11.59□□□□□ -0.55
TMEM39A-202ENST00000438581 DIEXFQ68CQ4 756 aaKnown RBP11.59□□□□□ -0.55
TMEM39A-202ENST00000438581 ZNF326Q5BKZ1 582 aaKnown RBP11.59□□□□□ -0.55
TMEM39A-202ENST00000438581 HOMEZQ8IX15 550 aa11.58□□□□□ -0.56
TMEM39A-202ENST00000438581 SMARCA4P51532 1647 aa11.57□□□□□ -0.56
TMEM39A-202ENST00000438581 TOP2AP11388 1531 aaKnown RBP11.56□□□□□ -0.56
TMEM39A-202ENST00000438581 ERCC6Q03468 1493 aa11.56□□□□□ -0.56
TMEM39A-202ENST00000438581 CHIC2Q9UKJ5 165 aa11.56□□□□□ -0.56
TMEM39A-202ENST00000438581 TNIKQ9UKE5 1360 aa11.54□□□□□ -0.56
TMEM39A-202ENST00000438581 CUX2O14529 1486 aa11.54□□□□□ -0.56
TMEM39A-202ENST00000438581 CEP164Q9UPV0 1460 aa11.53□□□□□ -0.56
TMEM39A-202ENST00000438581 MTUS2Q5JR59 1369 aa11.52□□□□□ -0.56
TMEM39A-202ENST00000438581 CARMIL1Q5VZK9 1371 aa11.49□□□□□ -0.57
TMEM39A-202ENST00000438581 CADPSQ9ULU8 1353 aa11.49□□□□□ -0.57
TMEM39A-202ENST00000438581 NEFLP07196 543 aa11.49□□□□□ -0.57
TMEM39A-202ENST00000438581 SLC4A1APQ9BWU0 796 aaKnown RBP11.49□□□□□ -0.57
TMEM39A-202ENST00000438581 NPM1P06748 294 aaKnown RBP eCLIP11.48□□□□□ -0.57
TMEM39A-202ENST00000438581 TDRD9Q8NDG6 1382 aaKnown RBP11.48□□□□□ -0.57
TMEM39A-202ENST00000438581 KCNH8Q96L42 1107 aa11.45□□□□□ -0.58
TMEM39A-202ENST00000438581 ZNF316A6NFI3 1004 aaPredicted RBP11.45□□□□□ -0.58
TMEM39A-202ENST00000438581 PDS5BQ9NTI5 1447 aa11.44□□□□□ -0.58
TMEM39A-202ENST00000438581 RRP7BPQ9NSQ0 103 aa11.41□□□□□ -0.58
TMEM39A-202ENST00000438581 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.4□□□□□ -0.58
TMEM39A-202ENST00000438581 RUSC2Q8N2Y8 1516 aa11.4□□□□□ -0.58
TMEM39A-202ENST00000438581 PLEKHD1A6NEE1 506 aa11.4□□□□□ -0.58
TMEM39A-202ENST00000438581 TSPY4P0CV99 314 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms