Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SSX4O60224 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SSX4O60224 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SSX4O60224 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
SSX4O60224 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SSX4O60224 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC23.84■■□□□ 1.41
SSX4O60224 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
SSX4O60224 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SSX4O60224 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SSX4O60224 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
SSX4O60224 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SSX4O60224 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
SSX4O60224 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SSX4O60224 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.83■■□□□ 1.41
SSX4O60224 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SSX4O60224 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SSX4O60224 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.83■■□□□ 1.4
SSX4O60224 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.82■■□□□ 1.4
SSX4O60224 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC23.82■■□□□ 1.4
SSX4O60224 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SSX4O60224 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SSX4O60224 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC23.81■■□□□ 1.4
SSX4O60224 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SSX4O60224 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
SSX4O60224 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.81■■□□□ 1.4
SSX4O60224 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SSX4O60224 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SSX4O60224 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SSX4O60224 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SSX4O60224 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SSX4O60224 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SSX4O60224 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SSX4O60224 RPS2P35-201ENST00000443417 897 ntBASIC23.79■■□□□ 1.4
SSX4O60224 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SSX4O60224 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
SSX4O60224 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.77■■□□□ 1.4
SSX4O60224 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
SSX4O60224 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SSX4O60224 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
SSX4O60224 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SSX4O60224 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.76■■□□□ 1.39
SSX4O60224 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
SSX4O60224 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.75■■□□□ 1.39
SSX4O60224 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.75■■□□□ 1.39
SSX4O60224 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SSX4O60224 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.75■■□□□ 1.39
SSX4O60224 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SSX4O60224 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.74■■□□□ 1.39
SSX4O60224 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.73■■□□□ 1.39
SSX4O60224 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SSX4O60224 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SSX4O60224 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
SSX4O60224 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
SSX4O60224 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
SSX4O60224 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SSX4O60224 CAHM-201ENST00000604200 896 ntBASIC23.69■■□□□ 1.38
SSX4O60224 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SSX4O60224 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SSX4O60224 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SSX4O60224 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SSX4O60224 AC120057.4-201ENST00000624722 1615 ntBASIC23.65■■□□□ 1.38
SSX4O60224 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SSX4O60224 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.63■■□□□ 1.37
SSX4O60224 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SSX4O60224 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SSX4O60224 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SSX4O60224 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SSX4O60224 AL133380.1-201ENST00000506013 324 ntBASIC23.62■■□□□ 1.37
SSX4O60224 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.62■■□□□ 1.37
SSX4O60224 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.61■■□□□ 1.37
SSX4O60224 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SSX4O60224 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SSX4O60224 AL391121.1-201ENST00000607967 1349 ntBASIC23.6■■□□□ 1.37
SSX4O60224 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SSX4O60224 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SSX4O60224 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SSX4O60224 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SSX4O60224 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.59■■□□□ 1.37
SSX4O60224 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SSX4O60224 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.59■■□□□ 1.37
SSX4O60224 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC23.58■■□□□ 1.37
SSX4O60224 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SSX4O60224 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.57■■□□□ 1.36
SSX4O60224 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
SSX4O60224 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.56■■□□□ 1.36
SSX4O60224 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SSX4O60224 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
SSX4O60224 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SSX4O60224 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.54■■□□□ 1.36
SSX4O60224 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
SSX4O60224 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SSX4O60224 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
SSX4O60224 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SSX4O60224 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SSX4O60224 AL162393.1-201ENST00000437852 946 ntBASIC23.52■■□□□ 1.36
SSX4O60224 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
SSX4O60224 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SSX4O60224 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
SSX4O60224 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SSX4O60224 AP006261.1-201ENST00000584783 668 ntBASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms