Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
TCRBV3S1A0A5B6 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
TCRBV3S1A0A5B6 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
TCRBV3S1A0A5B6 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
TCRBV3S1A0A5B6 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
TCRBV3S1A0A5B6 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
TCRBV3S1A0A5B6 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.18■■□□□ 1.62
TCRBV3S1A0A5B6 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
TCRBV3S1A0A5B6 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TCRBV3S1A0A5B6 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TCRBV3S1A0A5B6 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.16■■□□□ 1.62
TCRBV3S1A0A5B6 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
TCRBV3S1A0A5B6 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TCRBV3S1A0A5B6 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
TCRBV3S1A0A5B6 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TCRBV3S1A0A5B6 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
TCRBV3S1A0A5B6 AL135925.1-201ENST00000605920 1701 ntBASIC25.13■■□□□ 1.61
TCRBV3S1A0A5B6 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
TCRBV3S1A0A5B6 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TCRBV3S1A0A5B6 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
TCRBV3S1A0A5B6 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
TCRBV3S1A0A5B6 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TCRBV3S1A0A5B6 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
TCRBV3S1A0A5B6 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TCRBV3S1A0A5B6 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TCRBV3S1A0A5B6 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.09■■□□□ 1.61
TCRBV3S1A0A5B6 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TCRBV3S1A0A5B6 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.09■■□□□ 1.61
TCRBV3S1A0A5B6 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.08■■□□□ 1.61
TCRBV3S1A0A5B6 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TCRBV3S1A0A5B6 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TCRBV3S1A0A5B6 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
TCRBV3S1A0A5B6 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
TCRBV3S1A0A5B6 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
TCRBV3S1A0A5B6 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
TCRBV3S1A0A5B6 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC25.04■■□□□ 1.6
TCRBV3S1A0A5B6 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
TCRBV3S1A0A5B6 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
TCRBV3S1A0A5B6 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
TCRBV3S1A0A5B6 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25■■□□□ 1.59
TCRBV3S1A0A5B6 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
TCRBV3S1A0A5B6 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
TCRBV3S1A0A5B6 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
TCRBV3S1A0A5B6 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
TCRBV3S1A0A5B6 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.96■■□□□ 1.59
TCRBV3S1A0A5B6 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC24.96■■□□□ 1.59
TCRBV3S1A0A5B6 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC24.96■■□□□ 1.59
TCRBV3S1A0A5B6 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
TCRBV3S1A0A5B6 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
TCRBV3S1A0A5B6 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.59
TCRBV3S1A0A5B6 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.95■■□□□ 1.59
TCRBV3S1A0A5B6 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
TCRBV3S1A0A5B6 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.94■■□□□ 1.58
TCRBV3S1A0A5B6 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
TCRBV3S1A0A5B6 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
TCRBV3S1A0A5B6 AL121749.1-202ENST00000609313 2153 ntBASIC24.94■■□□□ 1.58
TCRBV3S1A0A5B6 DRD5P2-201ENST00000421395 2012 ntBASIC24.93■■□□□ 1.58
TCRBV3S1A0A5B6 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TCRBV3S1A0A5B6 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.93■■□□□ 1.58
TCRBV3S1A0A5B6 AL139393.2-201ENST00000608721 2025 ntBASIC24.92■■□□□ 1.58
TCRBV3S1A0A5B6 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TCRBV3S1A0A5B6 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
TCRBV3S1A0A5B6 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
TCRBV3S1A0A5B6 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
TCRBV3S1A0A5B6 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
TCRBV3S1A0A5B6 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
TCRBV3S1A0A5B6 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
TCRBV3S1A0A5B6 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
TCRBV3S1A0A5B6 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
TCRBV3S1A0A5B6 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
TCRBV3S1A0A5B6 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
TCRBV3S1A0A5B6 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
TCRBV3S1A0A5B6 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
TCRBV3S1A0A5B6 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
TCRBV3S1A0A5B6 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
TCRBV3S1A0A5B6 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
TCRBV3S1A0A5B6 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
TCRBV3S1A0A5B6 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
TCRBV3S1A0A5B6 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
TCRBV3S1A0A5B6 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
TCRBV3S1A0A5B6 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
TCRBV3S1A0A5B6 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
TCRBV3S1A0A5B6 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
TCRBV3S1A0A5B6 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
TCRBV3S1A0A5B6 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
TCRBV3S1A0A5B6 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
TCRBV3S1A0A5B6 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.56
TCRBV3S1A0A5B6 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
TCRBV3S1A0A5B6 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
TCRBV3S1A0A5B6 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TCRBV3S1A0A5B6 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TCRBV3S1A0A5B6 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
TCRBV3S1A0A5B6 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC24.81■■□□□ 1.56
TCRBV3S1A0A5B6 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
TCRBV3S1A0A5B6 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.8■■□□□ 1.56
TCRBV3S1A0A5B6 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TCRBV3S1A0A5B6 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC24.8■■□□□ 1.56
TCRBV3S1A0A5B6 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.8■■□□□ 1.56
TCRBV3S1A0A5B6 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TCRBV3S1A0A5B6 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms