Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USH1CQ9Y6N9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USH1CQ9Y6N9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USH1CQ9Y6N9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 MTDHP2-201ENST00000601468 714 ntBASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
USH1CQ9Y6N9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USH1CQ9Y6N9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
USH1CQ9Y6N9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
USH1CQ9Y6N9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USH1CQ9Y6N9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USH1CQ9Y6N9 AC006128.1-201ENST00000624704 1661 ntBASIC20.83■□□□□ 0.92
USH1CQ9Y6N9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USH1CQ9Y6N9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms