Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 AC010980.1-201ENST00000587192 1142 ntBASIC19.84■□□□□ 0.77
AP4S1Q9Y587 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.84■□□□□ 0.77
AP4S1Q9Y587 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.83■□□□□ 0.77
AP4S1Q9Y587 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
AP4S1Q9Y587 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
AP4S1Q9Y587 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
AP4S1Q9Y587 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
AP4S1Q9Y587 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 MIR4508-201ENST00000584178 70 ntBASIC19.81■□□□□ 0.76
AP4S1Q9Y587 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
AP4S1Q9Y587 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 AC027702.1-201ENST00000563810 1770 ntBASIC19.8■□□□□ 0.76
AP4S1Q9Y587 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
AP4S1Q9Y587 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.79■□□□□ 0.76
AP4S1Q9Y587 AC087289.5-201ENST00000586076 3175 ntBASIC19.79■□□□□ 0.76
AP4S1Q9Y587 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
AP4S1Q9Y587 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.79■□□□□ 0.76
AP4S1Q9Y587 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
AP4S1Q9Y587 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms