Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 HLA-L-211ENST00000482052 1765 ntBASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
COL25A1Q9BXS0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 RBM17P1-201ENST00000453646 1190 ntBASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 AL691432.3-201ENST00000621860 400 ntBASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 OR7E47P-201ENST00000546390 1422 ntBASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 AC079598.2-202ENST00000546624 1451 ntBASIC21.71■■□□□ 1.07
COL25A1Q9BXS0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
COL25A1Q9BXS0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL25A1Q9BXS0 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 AP000525.1-201ENST00000608286 694 ntBASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL25A1Q9BXS0 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 MIR1238-201ENST00000408483 83 ntBASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 NAPSB-206ENST00000562112 1266 ntBASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL25A1Q9BXS0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 KRT18P16-201ENST00000510337 1294 ntBASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL25A1Q9BXS0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL25A1Q9BXS0 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms