Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC10.01□□□□□ -0.812e-8■■■□□ 18.1
YBX3P16989 FCGR2A-205ENST00000467525 1642 ntTSL 513.21□□□□□ -0.34e-8■■■□□ 18.1
YBX3P16989 FCGR2A-201ENST00000271450 2412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.564e-8■■■□□ 18.1
YBX3P16989 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.154e-7■■■□□ 18.1
YBX3P16989 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.44■■□□□ 1.829e-6■■■□□ 18.1
YBX3P16989 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.529e-6■■■□□ 18.1
YBX3P16989 EIF4G1-237ENST00000485712 474 ntTSL 423.16■■□□□ 1.32e-10■■■□□ 18.1
YBX3P16989 MTA1-220ENST00000552286 1943 ntTSL 222.74■■□□□ 1.233e-7■■■□□ 18.1
YBX3P16989 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.33■■□□□ 19e-6■■■□□ 18.1
YBX3P16989 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.2■□□□□ 0.829e-6■■■□□ 18.1
YBX3P16989 LRP8-209ENST00000480045 3231 ntTSL 520.15■□□□□ 0.829e-6■■■□□ 18.1
YBX3P16989 OPTN-210ENST00000482140 667 ntTSL 319.44■□□□□ 0.79e-6■■■□□ 18.1
YBX3P16989 FAM234A-206ENST00000420046 1006 ntTSL 519.39■□□□□ 0.699e-6■■■□□ 18.1
YBX3P16989 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.699e-6■■■□□ 18.1
YBX3P16989 FAM234A-213ENST00000449945 887 ntTSL 519.13■□□□□ 0.659e-6■■■□□ 18.1
YBX3P16989 FAM234A-214ENST00000453430 984 ntTSL 518.7■□□□□ 0.589e-6■■■□□ 18.1
YBX3P16989 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.449e-6■■■□□ 18.1
YBX3P16989 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.62■□□□□ 0.419e-6■■■□□ 18.1
YBX3P16989 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.43■□□□□ 0.389e-6■■■□□ 18.1
YBX3P16989 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.169e-6■■■□□ 18.1
YBX3P16989 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.04■□□□□ 0.169e-6■■■□□ 18.1
YBX3P16989 FAM234A-210ENST00000426695 374 ntTSL 515.63■□□□□ 0.099e-6■■■□□ 18.1
YBX3P16989 HDAC6-220ENST00000477528 4832 ntTSL 1 (best)15.02□□□□□ -0.019e-6■■■□□ 18.1
YBX3P16989 FAM234A-205ENST00000419173 583 ntTSL 514.7□□□□□ -0.069e-6■■■□□ 18.1
YBX3P16989 OPTN-208ENST00000430081 848 ntTSL 514.51□□□□□ -0.099e-6■■■□□ 18.1
YBX3P16989 FAM234A-207ENST00000420500 459 ntTSL 514.35□□□□□ -0.119e-6■■■□□ 18.1
YBX3P16989 ERMARD-201ENST00000366771 2206 ntTSL 214.21□□□□□ -0.139e-6■■■□□ 18.1
YBX3P16989 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.1□□□□□ -0.159e-6■■■□□ 18.1
YBX3P16989 GEMIN2-201ENST00000250379 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.169e-6■■■□□ 18.1
YBX3P16989 GEMIN2-202ENST00000308317 1420 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.259e-6■■■□□ 18.1
YBX3P16989 FAM234A-201ENST00000301678 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.299e-6■■■□□ 18.1
YBX3P16989 HDAC6-201ENST00000334136 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.39e-6■■■□□ 18.1
YBX3P16989 HDAC6-222ENST00000478095 620 ntTSL 413.15□□□□□ -0.39e-6■■■□□ 18.1
YBX3P16989 ERMARD-204ENST00000392095 1908 ntTSL 2 BASIC13□□□□□ -0.339e-6■■■□□ 18.1
YBX3P16989 FAM234A-204ENST00000417499 583 ntTSL 312.54□□□□□ -0.49e-6■■■□□ 18.1
YBX3P16989 GEMIN2-207ENST00000525153 1476 ntTSL 1 (best)12.4□□□□□ -0.439e-6■■■□□ 18.1
YBX3P16989 HDAC6-203ENST00000376619 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.59e-6■■■□□ 18.1
YBX3P16989 KANSL2-201ENST00000420613 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.519e-6■■■□□ 18.1
YBX3P16989 OPTN-206ENST00000378764 2498 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.519e-6■■■□□ 18.1
YBX3P16989 CAMSAP1-201ENST00000312405 6054 ntTSL 1 (best) BASIC11.72□□□□□ -0.539e-6■■■□□ 18.1
YBX3P16989 CAMSAP1-207ENST00000483991 4342 ntTSL 211.63□□□□□ -0.559e-6■■■□□ 18.1
YBX3P16989 SPTBN1-202ENST00000356805 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.561e-7■■■□□ 18.1
YBX3P16989 ERMARD-205ENST00000418781 1841 ntTSL 1 (best) BASIC11.38□□□□□ -0.599e-6■■■□□ 18.1
YBX3P16989 FAM234A-216ENST00000496874 598 ntTSL 311.36□□□□□ -0.599e-6■■■□□ 18.1
YBX3P16989 HDAC6-228ENST00000486227 4718 ntTSL 211.3□□□□□ -0.69e-6■■■□□ 18.1
YBX3P16989 OPTN-201ENST00000263036 2464 ntAPPRIS P2 TSL 2 BASIC10.97□□□□□ -0.659e-6■■■□□ 18.1
YBX3P16989 ERMARD-203ENST00000366773 2141 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.679e-6■■■□□ 18.1
YBX3P16989 KANSL2-206ENST00000548147 1514 ntTSL 210.74□□□□□ -0.699e-6■■■□□ 18.1
YBX3P16989 KANSL2-202ENST00000546701 1881 ntTSL 210.1□□□□□ -0.799e-6■■■□□ 18.1
YBX3P16989 OPTN-205ENST00000378757 3321 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.819e-6■■■□□ 18.1
YBX3P16989 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC9.31□□□□□ -0.921e-7■■■□□ 18.1
YBX3P16989 OPTN-204ENST00000378752 3488 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.929e-6■■■□□ 18.1
YBX3P16989 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.959e-6■■■□□ 18.1
YBX3P16989 KANSL2-211ENST00000549574 1625 ntTSL 58.92□□□□□ -0.989e-6■■■□□ 18.1
YBX3P16989 FAM234A-211ENST00000438220 554 ntTSL 58.78□□□□□ -19e-6■■■□□ 18.1
YBX3P16989 TTC37-207ENST00000507805 1321 ntTSL 58.73□□□□□ -1.019e-6■■■□□ 18.1
YBX3P16989 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC8.7□□□□□ -1.029e-6■■■□□ 18.1
YBX3P16989 KANSL2-204ENST00000547536 509 ntTSL 28.66□□□□□ -1.029e-6■■■□□ 18.1
YBX3P16989 TTC37-206ENST00000506007 884 ntTSL 38.63□□□□□ -1.039e-6■■■□□ 18.1
YBX3P16989 FAM234A-212ENST00000447499 432 ntTSL 58.58□□□□□ -1.049e-6■■■□□ 18.1
YBX3P16989 GEMIN2-206ENST00000524980 662 ntTSL 28.38□□□□□ -1.079e-6■■■□□ 18.1
YBX3P16989 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC8.06□□□□□ -1.129e-6■■■□□ 18.1
YBX3P16989 KANSL2-205ENST00000547582 581 ntTSL 57.85□□□□□ -1.159e-6■■■□□ 18.1
YBX3P16989 LRP8-205ENST00000459674 3300 ntTSL 27.18□□□□□ -1.269e-6■■■□□ 18.1
YBX3P16989 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.289e-6■■■□□ 18.1
YBX3P16989 SIN3A-215ENST00000570124 593 ntTSL 26.45□□□□□ -1.389e-6■■■□□ 18.1
YBX3P16989 TTC37-208ENST00000508181 872 ntTSL 36.18□□□□□ -1.429e-6■■■□□ 18.1
YBX3P16989 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.15□□□□□ -1.589e-6■■■□□ 18.1
YBX3P16989 SEC24C-205ENST00000496827 948 ntTSL 315.66■□□□□ 0.15e-13■■■□□ 18.1
YBX3P16989 SEC24C-201ENST00000339365 4513 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.525e-13■■■□□ 18.1
YBX3P16989 SEC24C-203ENST00000465076 4668 ntTSL 1 (best)11.62□□□□□ -0.555e-13■■■□□ 18.1
YBX3P16989 SEC24C-202ENST00000345254 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.75e-13■■■□□ 18.1
YBX3P16989 SEC24C-207ENST00000635550 3424 ntTSL 27.51□□□□□ -1.215e-13■■■□□ 18.1
YBX3P16989 MATR3-235ENST00000506147 580 ntTSL 419.61■□□□□ 0.731e-27■■■□□ 18.1
YBX3P16989 AC067931.1-201ENST00000624190 671 ntBASIC6.43□□□□□ -1.386e-7■■■□□ 18.1
YBX3P16989 MCUR1-202ENST00000488770 1826 ntTSL 224.41■■□□□ 1.57e-7■■■□□ 18.1
YBX3P16989 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.597e-7■■■□□ 18.1
YBX3P16989 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC38.5■■■■□ 3.759e-6■■■□□ 18.1
YBX3P16989 F12-204ENST00000504406 943 ntTSL 230.48■■■□□ 2.479e-6■■■□□ 18.1
YBX3P16989 MGAT4B-212ENST00000520134 592 ntTSL 329.89■■■□□ 2.389e-6■■■□□ 18.1
YBX3P16989 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.5■■■□□ 2.159e-6■■■□□ 18.1
YBX3P16989 F12-205ENST00000510358 1573 ntTSL 227.47■■□□□ 1.999e-6■■■□□ 18.1
YBX3P16989 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC27.21■■□□□ 1.959e-6■■■□□ 18.1
YBX3P16989 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.889e-6■■■□□ 18.1
YBX3P16989 SLC39A14-209ENST00000520644 377 ntTSL 526.61■■□□□ 1.859e-6■■■□□ 18.1
YBX3P16989 F8-203ENST00000423959 791 ntTSL 326.51■■□□□ 1.839e-6■■■□□ 18.1
YBX3P16989 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC25.28■■□□□ 1.649e-6■■■□□ 18.1
YBX3P16989 MGAT4B-203ENST00000518168 1013 ntTSL 224.53■■□□□ 1.529e-6■■■□□ 18.1
YBX3P16989 WDR92-205ENST00000468984 724 ntTSL 324.38■■□□□ 1.499e-6■■■□□ 18.1
YBX3P16989 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC24.29■■□□□ 1.489e-6■■■□□ 18.1
YBX3P16989 SLC39A14-206ENST00000517552 576 ntTSL 324.2■■□□□ 1.469e-6■■■□□ 18.1
YBX3P16989 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC24.11■■□□□ 1.459e-6■■■□□ 18.1
YBX3P16989 SLC39A14-212ENST00000524285 570 ntTSL 423.78■■□□□ 1.49e-6■■■□□ 18.1
YBX3P16989 MGAT4B-217ENST00000521305 1213 ntTSL 523.45■■□□□ 1.349e-6■■■□□ 18.1
YBX3P16989 DDX50-205ENST00000483593 1067 ntTSL 323.35■■□□□ 1.339e-6■■■□□ 18.1
YBX3P16989 GRPEL1-204ENST00000514056 424 ntTSL 223.31■■□□□ 1.329e-6■■■□□ 18.1
YBX3P16989 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC22.7■■□□□ 1.229e-6■■■□□ 18.1
YBX3P16989 CDC42EP1-203ENST00000430687 720 ntAPPRIS ALT2 TSL 322.61■■□□□ 1.219e-6■■■□□ 18.1
YBX3P16989 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.29e-6■■■□□ 18.1
YBX3P16989 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.26■□□□□ 0.999e-6■■■□□ 18.1
Retrieved 100 of 29,075 protein–RNA pairs in 305.5 ms