Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 RPS2P4-201ENST00000476944 856 ntBASIC19.13■□□□□ 0.65
SHANK1Q9Y566 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 AC079089.2-201ENST00000531211 1277 ntBASIC19.13■□□□□ 0.65
SHANK1Q9Y566 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK1Q9Y566 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK1Q9Y566 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.11■□□□□ 0.65
SHANK1Q9Y566 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 LINC00526-201ENST00000581067 1875 ntBASIC19.1■□□□□ 0.65
SHANK1Q9Y566 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SHANK1Q9Y566 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 OR7E47P-201ENST00000546390 1422 ntBASIC19.09■□□□□ 0.65
SHANK1Q9Y566 RBM17P2-201ENST00000616397 1405 ntBASIC19.09■□□□□ 0.65
SHANK1Q9Y566 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SHANK1Q9Y566 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.08■□□□□ 0.65
SHANK1Q9Y566 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms