Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.2■□□□□ 0.82
CLHC1Q8NHS4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLHC1Q8NHS4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CLHC1Q8NHS4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 IGHV3-19-201ENST00000521488 291 ntBASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLHC1Q8NHS4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 AC099791.1-201ENST00000416440 715 ntBASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 PBX2P1-201ENST00000493219 1291 ntBASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.18■□□□□ 0.82
CLHC1Q8NHS4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLHC1Q8NHS4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 TSPY26P-201ENST00000476365 1326 ntBASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 AL049796.1-201ENST00000565336 1766 ntBASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLHC1Q8NHS4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLHC1Q8NHS4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms