Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGB3O15347 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HMGB3O15347 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC16.95■□□□□ 0.3
HMGB3O15347 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGB3O15347 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGB3O15347 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HMGB3O15347 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGB3O15347 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB3O15347 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB3O15347 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HMGB3O15347 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB3O15347 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGB3O15347 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGB3O15347 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HMGB3O15347 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGB3O15347 HYI-210ENST00000486909 905 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB3O15347 AC022616.5-201ENST00000518796 181 ntBASIC16.94■□□□□ 0.3
HMGB3O15347 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HMGB3O15347 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HMGB3O15347 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB3O15347 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HMGB3O15347 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC16.93■□□□□ 0.3
HMGB3O15347 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 AL391422.3-201ENST00000603791 2761 ntBASIC16.93■□□□□ 0.3
HMGB3O15347 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB3O15347 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB3O15347 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB3O15347 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGB3O15347 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB3O15347 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGB3O15347 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HMGB3O15347 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HMGB3O15347 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC16.92■□□□□ 0.3
HMGB3O15347 MIR4281-201ENST00000580852 62 ntBASIC16.92■□□□□ 0.3
HMGB3O15347 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HMGB3O15347 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 RNF126P1-201ENST00000567452 1320 ntBASIC16.92■□□□□ 0.3
HMGB3O15347 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGB3O15347 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB3O15347 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
HMGB3O15347 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HMGB3O15347 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB3O15347 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB3O15347 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB3O15347 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB3O15347 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
HMGB3O15347 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 AC129492.7-201ENST00000622992 756 ntBASIC16.91■□□□□ 0.3
HMGB3O15347 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HMGB3O15347 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB3O15347 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB3O15347 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB3O15347 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms