Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PCDHGA11Q9Y5H2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 RNF165-205ENST00000588679 2904 ntBASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 BX005040.4-201ENST00000637145 1518 ntBASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA11Q9Y5H2 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
PCDHGA11Q9Y5H2 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA11Q9Y5H2 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 AC005837.3-201ENST00000612163 286 ntBASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA11Q9Y5H2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.43■□□□□ 0.86
PCDHGA11Q9Y5H2 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 AC005224.4-201ENST00000583262 1652 ntBASIC20.42■□□□□ 0.86
PCDHGA11Q9Y5H2 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.41■□□□□ 0.86
PCDHGA11Q9Y5H2 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms