Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 JPT2-212ENST00000568376 297 ntTSL 35.8□□□□□ -1.483e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.1□□□□□ -1.593e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.613e-6■■■□□ 16.1
DDX55Q8NHQ9 NAE1-206ENST00000562074 571 ntTSL 24.32□□□□□ -1.723e-6■■■□□ 16.1
DDX55Q8NHQ9 NECAB3-209ENST00000483813 1277 ntTSL 524.41■■□□□ 1.53e-11■■■□□ 16.1
DDX55Q8NHQ9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.73■■□□□ 1.393e-11■■■□□ 16.1
DDX55Q8NHQ9 NECAB3-213ENST00000488489 2142 ntTSL 222.79■■□□□ 1.243e-11■■■□□ 16.1
DDX55Q8NHQ9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.083e-11■■■□□ 16.1
DDX55Q8NHQ9 NECAB3-218ENST00000606525 2010 ntTSL 219.97■□□□□ 0.793e-11■■■□□ 16.1
DDX55Q8NHQ9 NECAB3-206ENST00000477778 462 ntTSL 315.29■□□□□ 0.043e-11■■■□□ 16.1
DDX55Q8NHQ9 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.293e-9■■■□□ 16
DDX55Q8NHQ9 AES-203ENST00000585557 491 ntTSL 534.92■■■■□ 3.181e-10■■■□□ 16
DDX55Q8NHQ9 POR-216ENST00000454934 2295 ntTSL 317.28■□□□□ 0.361e-9■■■□□ 16
DDX55Q8NHQ9 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.341e-9■■■□□ 16
DDX55Q8NHQ9 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.35■□□□□ 0.211e-9■■■□□ 16
DDX55Q8NHQ9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.82■□□□□ 0.762e-7■■■□□ 16
DDX55Q8NHQ9 CLDN4-203ENST00000435050 4163 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.322e-7■■■□□ 16
DDX55Q8NHQ9 CLDN4-202ENST00000431918 4108 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.472e-7■■■□□ 16
DDX55Q8NHQ9 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.326e-13■■■□□ 16
DDX55Q8NHQ9 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.046e-13■■■□□ 16
DDX55Q8NHQ9 SRSF5-215ENST00000556587 1863 ntTSL 1 (best)14.5□□□□□ -0.096e-13■■■□□ 16
DDX55Q8NHQ9 SRSF5-205ENST00000553635 1412 ntTSL 2 BASIC13.5□□□□□ -0.256e-13■■■□□ 16
DDX55Q8NHQ9 SRSF5-208ENST00000554929 947 ntTSL 212.6□□□□□ -0.396e-13■■■□□ 16
DDX55Q8NHQ9 SRSF5-216ENST00000556647 644 ntTSL 212.6□□□□□ -0.396e-13■■■□□ 16
DDX55Q8NHQ9 SRSF5-217ENST00000557154 1500 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.416e-13■■■□□ 16
DDX55Q8NHQ9 SRSF5-207ENST00000554465 3044 ntTSL 1 (best)9.2□□□□□ -0.946e-13■■■□□ 16
DDX55Q8NHQ9 TMEM189-205ENST00000453505 2028 ntTSL 1 (best)21.88■■□□□ 1.096e-9■■■□□ 16
DDX55Q8NHQ9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.076e-9■■■□□ 16
DDX55Q8NHQ9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.416e-9■■■□□ 16
DDX55Q8NHQ9 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.28■□□□□ 0.366e-9■■■□□ 16
DDX55Q8NHQ9 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.136e-9■■■□□ 16
DDX55Q8NHQ9 THOP1-203ENST00000585338 761 ntTSL 330.88■■■□□ 2.536e-6■■■□□ 16
DDX55Q8NHQ9 THOP1-204ENST00000585673 784 ntTSL 329.7■■■□□ 2.356e-6■■■□□ 16
DDX55Q8NHQ9 OS9-208ENST00000546916 1028 ntTSL 225.23■■□□□ 1.632e-6■■■□□ 16
DDX55Q8NHQ9 METRN-202ENST00000564661 1174 ntTSL 1 (best)24.81■■□□□ 1.566e-6■■■□□ 16
DDX55Q8NHQ9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC22.91■■□□□ 1.266e-6■■■□□ 16
DDX55Q8NHQ9 THOP1-206ENST00000586780 421 ntTSL 322.69■■□□□ 1.226e-6■■■□□ 16
DDX55Q8NHQ9 DNAJC4-206ENST00000537109 1340 ntTSL 220.3■□□□□ 0.846e-6■■■□□ 16
DDX55Q8NHQ9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.786e-6■■■□□ 16
DDX55Q8NHQ9 DNAJC4-209ENST00000542376 546 ntTSL 219.65■□□□□ 0.746e-6■■■□□ 16
DDX55Q8NHQ9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.41■□□□□ 0.542e-6■■■□□ 16
DDX55Q8NHQ9 DNAJC4-205ENST00000536006 693 ntTSL 317.9■□□□□ 0.466e-6■■■□□ 16
DDX55Q8NHQ9 DNAJC4-211ENST00000543791 489 ntTSL 316.08■□□□□ 0.166e-6■■■□□ 16
DDX55Q8NHQ9 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.02■□□□□ 0.162e-6■■■□□ 16
DDX55Q8NHQ9 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.152e-6■■■□□ 16
DDX55Q8NHQ9 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.36■□□□□ 0.052e-6■■■□□ 16
DDX55Q8NHQ9 OS9-203ENST00000389142 2457 ntTSL 5 BASIC15.01□□□□□ -0.012e-6■■■□□ 16
DDX55Q8NHQ9 DNAJC4-207ENST00000538961 534 ntTSL 514.72□□□□□ -0.056e-6■■■□□ 16
DDX55Q8NHQ9 OS9-206ENST00000435406 2346 ntTSL 2 BASIC14.43□□□□□ -0.12e-6■■■□□ 16
DDX55Q8NHQ9 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.12e-6■■■□□ 16
DDX55Q8NHQ9 OS9-218ENST00000551035 2246 ntTSL 2 BASIC14.38□□□□□ -0.112e-6■■■□□ 16
DDX55Q8NHQ9 OS9-202ENST00000315970 2691 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.222e-6■■■□□ 16
DDX55Q8NHQ9 OS9-210ENST00000549307 3870 ntTSL 210□□□□□ -0.812e-6■■■□□ 16
DDX55Q8NHQ9 TMX2-CTNND1-201ENST00000528395 585 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.232e-13■■■□□ 16
DDX55Q8NHQ9 PTPRF-206ENST00000429895 6312 ntTSL 1 (best)16.85■□□□□ 0.291e-7■■■□□ 16
DDX55Q8NHQ9 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.72■□□□□ 0.271e-7■■■□□ 16
DDX55Q8NHQ9 PTPRF-215ENST00000496447 5887 ntTSL 1 (best)14.3□□□□□ -0.121e-7■■■□□ 16
DDX55Q8NHQ9 PTPRF-203ENST00000372407 4600 ntTSL 212.55□□□□□ -0.41e-7■■■□□ 16
DDX55Q8NHQ9 ARHGDIA-210ENST00000582520 245 ntTSL 311.81□□□□□ -0.525e-8■■■□□ 16
DDX55Q8NHQ9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.99■□□□□ 0.952e-8■■■□□ 16
DDX55Q8NHQ9 ARHGDIA-215ENST00000583868 815 ntTSL 316.99■□□□□ 0.312e-8■■■□□ 16
DDX55Q8NHQ9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.663e-8■■■□□ 15.9
DDX55Q8NHQ9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.473e-8■■■□□ 15.9
DDX55Q8NHQ9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.82■■□□□ 1.43e-8■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-PTCD1-202ENST00000437572 544 ntTSL 419.98■□□□□ 0.794e-20■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-PTCD1-203ENST00000451138 331 ntTSL 419.26■□□□□ 0.674e-20■■■□□ 15.9
DDX55Q8NHQ9 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.98■□□□□ 0.633e-8■■■□□ 15.9
DDX55Q8NHQ9 PTCD1-204ENST00000430982 571 ntTSL 418.55■□□□□ 0.564e-20■■■□□ 15.9
DDX55Q8NHQ9 PHGDH-231ENST00000641939 540 nt18.37■□□□□ 0.533e-8■■■□□ 15.9
DDX55Q8NHQ9 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.54■□□□□ 0.43e-8■■■□□ 15.9
DDX55Q8NHQ9 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.313e-8■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.134e-20■■■□□ 15.9
DDX55Q8NHQ9 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.073e-8■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-206ENST00000466753 774 ntTSL 215.07■□□□□ 04e-20■■■□□ 15.9
DDX55Q8NHQ9 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.055e-9■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-212ENST00000524321 584 ntTSL 214.36□□□□□ -0.114e-20■■■□□ 15.9
DDX55Q8NHQ9 CTPS1-202ENST00000372621 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.283e-8■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-204ENST00000414062 541 ntTSL 412.89□□□□□ -0.354e-20■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-208ENST00000485011 597 ntTSL 212.77□□□□□ -0.374e-20■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-211ENST00000523680 84 ntTSL 312.68□□□□□ -0.384e-20■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-202ENST00000359832 323 ntTSL 2 BASIC10.27□□□□□ -0.774e-20■■■□□ 15.9
DDX55Q8NHQ9 LYRM1-204ENST00000439021 1558 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.793e-8■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC9.59□□□□□ -0.874e-20■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-203ENST00000394186 305 ntAPPRIS P1 TSL 2 BASIC9.28□□□□□ -0.924e-20■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC8.24□□□□□ -1.094e-20■■■□□ 15.9
DDX55Q8NHQ9 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.283e-8■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-207ENST00000481899 738 ntTSL 26.23□□□□□ -1.411e-21■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-210ENST00000491560 658 ntTSL 26.09□□□□□ -1.431e-21■■■□□ 15.9
DDX55Q8NHQ9 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.99□□□□□ -1.453e-8■■■□□ 15.9
DDX55Q8NHQ9 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.43□□□□□ -1.544e-20■■■□□ 15.9
DDX55Q8NHQ9 RNU5E-4P-201ENST00000364931 120 ntBASIC4.55□□□□□ -1.683e-8■■■□□ 15.9
DDX55Q8NHQ9 SETD2-205ENST00000445387 7075 ntTSL 54.44□□□□□ -1.73e-8■■■□□ 15.9
DDX55Q8NHQ9 SNRPB-203ENST00000474384 985 ntTSL 521.69■■□□□ 1.061e-16■■■□□ 15.9
DDX55Q8NHQ9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.71e-16■■■□□ 15.9
DDX55Q8NHQ9 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.71e-16■■■□□ 15.9
DDX55Q8NHQ9 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC22.62■■□□□ 1.212e-18■■■□□ 15.9
DDX55Q8NHQ9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.152e-18■■■□□ 15.9
DDX55Q8NHQ9 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.35■□□□□ 0.852e-18■■■□□ 15.9
DDX55Q8NHQ9 MRPL2-209ENST00000491898 1020 ntTSL 217.74■□□□□ 0.432e-18■■■□□ 15.9
DDX55Q8NHQ9 MRPL2-204ENST00000470667 765 ntTSL 514.58□□□□□ -0.082e-18■■■□□ 15.9
Retrieved 100 of 15,504 protein–RNA pairs in 119.1 ms