RNA–Protein interactions for RNA: ENST00000372621.8

CTPS1-202, Transcript of CTP synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTPS1, Length 3,201 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTPS1-202ENST00000372621 NISCHQ9Y2I1 1504 aa26.51■■□□□ 1.83
CTPS1-202ENST00000372621 CCDC180Q9P1Z9 1646 aa22.58■■□□□ 1.21
CTPS1-202ENST00000372621 ZCCHC6Q5VYS8 1495 aaKnown RBP22.46■■□□□ 1.19
CTPS1-202ENST00000372621 SHROOM4Q9ULL8 1493 aa22.44■■□□□ 1.18
CTPS1-202ENST00000372621 SUPT5HO00267 1087 aaKnown RBP22.03■■□□□ 1.12
CTPS1-202ENST00000372621 DCAF1Q9Y4B6 1507 aa21.84■■□□□ 1.09
CTPS1-202ENST00000372621 DCAF8L2P0C7V8 631 aa21.67■■□□□ 1.06
CTPS1-202ENST00000372621 CHIC1Q5VXU3 224 aa21.57■■□□□ 1.04
CTPS1-202ENST00000372621 MYO15BQ96JP2 1530 aa21.55■■□□□ 1.04
CTPS1-202ENST00000372621 ABCC9O60706 1549 aa21.22■□□□□ 0.99
CTPS1-202ENST00000372621 SCRIBQ14160 1630 aa21.04■□□□□ 0.96
CTPS1-202ENST00000372621 HRCP23327 699 aa21.03■□□□□ 0.96
CTPS1-202ENST00000372621 RSF1Q96T23 1441 aaPredicted RBP20.97■□□□□ 0.95
CTPS1-202ENST00000372621 PCGF6Q9BYE7 350 aa20.89■□□□□ 0.93
CTPS1-202ENST00000372621 LOC105371045A0A1W2PR82 267 aa20.87■□□□□ 0.93
CTPS1-202ENST00000372621 NACADO15069 1562 aa20.81■□□□□ 0.92
CTPS1-202ENST00000372621 RB1CC1Q8TDY2 1594 aa20.79■□□□□ 0.92
CTPS1-202ENST00000372621 CECR2Q9BXF3 1484 aa20.62■□□□□ 0.89
CTPS1-202ENST00000372621 MROH2BQ7Z745 1585 aa20.58■□□□□ 0.89
CTPS1-202ENST00000372621 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
CTPS1-202ENST00000372621 TRIM26Q12899 539 aaPredicted RBP20.55■□□□□ 0.88
CTPS1-202ENST00000372621 PPARGC1BQ86YN6 1023 aaKnown RBP20.49■□□□□ 0.87
CTPS1-202ENST00000372621 WIZO95785 1651 aa20.49■□□□□ 0.87
CTPS1-202ENST00000372621 BAZ1AQ9NRL2 1556 aaPredicted RBP20.41■□□□□ 0.86
CTPS1-202ENST00000372621 EIF4G1Q04637 1599 aaKnown RBP20.35■□□□□ 0.85
CTPS1-202ENST00000372621 FAM9AQ8IZU1 332 aaPredicted RBP20.31■□□□□ 0.84
CTPS1-202ENST00000372621 UNC13AQ9UPW8 1703 aa20.21■□□□□ 0.83
CTPS1-202ENST00000372621 TOP2AP11388 1531 aaKnown RBP20.2■□□□□ 0.82
CTPS1-202ENST00000372621 SMARCA4P51532 1647 aa20.18■□□□□ 0.82
CTPS1-202ENST00000372621 ZEB1P37275 1124 aaPredicted RBP20.14■□□□□ 0.81
CTPS1-202ENST00000372621 SMARCA2P51531 1590 aa20.09■□□□□ 0.81
CTPS1-202ENST00000372621 CCDC88BA6NC98 1476 aa20.07■□□□□ 0.8
CTPS1-202ENST00000372621 EHMT2Q96KQ7 1210 aa20.06■□□□□ 0.8
CTPS1-202ENST00000372621 ABCC8Q09428 1581 aa20.01■□□□□ 0.79
CTPS1-202ENST00000372621 BICRAQ9NZM4 1560 aa19.91■□□□□ 0.78
CTPS1-202ENST00000372621 PEG3Q9GZU2 1588 aa19.86■□□□□ 0.77
CTPS1-202ENST00000372621 WRNQ14191 1432 aaPredicted RBP eCLIP19.86■□□□□ 0.77
CTPS1-202ENST00000372621 SOGA1O94964 1423 aa19.83■□□□□ 0.76
CTPS1-202ENST00000372621 EEA1Q15075 1411 aa19.8■□□□□ 0.76
CTPS1-202ENST00000372621 CEP162Q5TB80 1403 aa19.78■□□□□ 0.76
CTPS1-202ENST00000372621 TNIKQ9UKE5 1360 aa19.78■□□□□ 0.76
CTPS1-202ENST00000372621 RUSC2Q8N2Y8 1516 aa19.74■□□□□ 0.75
CTPS1-202ENST00000372621 PABPN1Q86U42 306 aaKnown RBP eCLIP19.72■□□□□ 0.75
CTPS1-202ENST00000372621 CSRNP3Q8WYN3 585 aa19.7■□□□□ 0.74
CTPS1-202ENST00000372621 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.65■□□□□ 0.74
CTPS1-202ENST00000372621 GOLGA3Q08378 1498 aa19.64■□□□□ 0.73
CTPS1-202ENST00000372621 SYNJ1O43426 1573 aa19.62■□□□□ 0.73
CTPS1-202ENST00000372621 ATAD2BQ9ULI0 1458 aa19.61■□□□□ 0.73
CTPS1-202ENST00000372621 CCER1Q8TC90 406 aaPredicted RBP19.59■□□□□ 0.73
CTPS1-202ENST00000372621 KIF21BO75037 1637 aa19.57■□□□□ 0.72
CTPS1-202ENST00000372621 UBTFP17480 764 aaKnown RBP19.54■□□□□ 0.72
CTPS1-202ENST00000372621 BAZ1BQ9UIG0 1483 aaKnown RBP19.53■□□□□ 0.72
CTPS1-202ENST00000372621 CEP164Q9UPV0 1460 aa19.53■□□□□ 0.72
CTPS1-202ENST00000372621 TTBK1Q5TCY1 1321 aaPredicted RBP19.46■□□□□ 0.71
CTPS1-202ENST00000372621 TOP2BQ02880 1626 aa19.41■□□□□ 0.7
CTPS1-202ENST00000372621 SCAF1Q9H7N4 1312 aaKnown RBP19.39■□□□□ 0.69
CTPS1-202ENST00000372621 CLIP1P30622 1438 aa19.38■□□□□ 0.69
CTPS1-202ENST00000372621 BIVM-ERCC5R4GMW8 1640 aa19.36■□□□□ 0.69
CTPS1-202ENST00000372621 RAPGEF2Q9Y4G8 1499 aa19.36■□□□□ 0.69
CTPS1-202ENST00000372621 VPS8Q8N3P4 1428 aa19.35■□□□□ 0.69
CTPS1-202ENST00000372621 DIEXFQ68CQ4 756 aaKnown RBP19.28■□□□□ 0.68
CTPS1-202ENST00000372621 HMGXB3Q12766 1538 aa19.27■□□□□ 0.68
CTPS1-202ENST00000372621 ERICH3Q5RHP9 1530 aa19.24■□□□□ 0.67
CTPS1-202ENST00000372621 NCAPD3P42695 1498 aa19.24■□□□□ 0.67
CTPS1-202ENST00000372621 PRXQ9BXM0 1461 aa19.22■□□□□ 0.67
CTPS1-202ENST00000372621 ACIN1Q9UKV3 1341 aaKnown RBP19.2■□□□□ 0.66
CTPS1-202ENST00000372621 CUX1P39880 1505 aa19.16■□□□□ 0.66
CTPS1-202ENST00000372621 ZNF316A6NFI3 1004 aaPredicted RBP19.15■□□□□ 0.66
CTPS1-202ENST00000372621 NEUROD1Q13562 356 aa19.15■□□□□ 0.66
CTPS1-202ENST00000372621 HNRNPUL2Q1KMD3 747 aaKnown RBP19.14■□□□□ 0.65
CTPS1-202ENST00000372621 ARAP1Q96P48 1450 aa19.12■□□□□ 0.65
CTPS1-202ENST00000372621 APLP2Q06481 763 aa19.11■□□□□ 0.65
CTPS1-202ENST00000372621 CFTRP13569 1480 aa19.11■□□□□ 0.65
CTPS1-202ENST00000372621 PELP1Q8IZL8 1130 aaKnown RBP19.07■□□□□ 0.64
CTPS1-202ENST00000372621 PRDM2Q13029 1718 aa19.06■□□□□ 0.64
CTPS1-202ENST00000372621 KIF27Q86VH2 1401 aa19.05■□□□□ 0.64
CTPS1-202ENST00000372621 RANGAP1P46060 587 aaPredicted RBP19.04■□□□□ 0.64
CTPS1-202ENST00000372621 CENPBP07199 599 aaPredicted RBP19.04■□□□□ 0.64
CTPS1-202ENST00000372621 KANK4Q5T7N3 995 aaPredicted RBP18.95■□□□□ 0.62
CTPS1-202ENST00000372621 RRBP1Q9P2E9 1410 aaKnown RBP18.94■□□□□ 0.62
CTPS1-202ENST00000372621 CLSPNQ9HAW4 1339 aa18.94■□□□□ 0.62
CTPS1-202ENST00000372621 ARHGAP35Q9NRY4 1499 aa18.94■□□□□ 0.62
CTPS1-202ENST00000372621 GTF3C3Q9Y5Q9 886 aa18.93■□□□□ 0.62
CTPS1-202ENST00000372621 DHX57Q6P158 1386 aaKnown RBP18.92■□□□□ 0.62
CTPS1-202ENST00000372621 CUX2O14529 1486 aa18.88■□□□□ 0.61
CTPS1-202ENST00000372621 MIER1Q8N108 512 aa18.87■□□□□ 0.61
CTPS1-202ENST00000372621 IGF1RP08069 1367 aa18.85■□□□□ 0.61
CTPS1-202ENST00000372621 CADPSQ9ULU8 1353 aa18.83■□□□□ 0.61
CTPS1-202ENST00000372621 MAP3K1Q13233 1512 aa18.8■□□□□ 0.6
CTPS1-202ENST00000372621 CCNB3Q8WWL7 1395 aa18.8■□□□□ 0.6
CTPS1-202ENST00000372621 FGD5Q6ZNL6 1462 aa18.78■□□□□ 0.6
CTPS1-202ENST00000372621 TIAM1Q13009 1591 aa18.76■□□□□ 0.59
CTPS1-202ENST00000372621 CARMIL1Q5VZK9 1371 aa18.74■□□□□ 0.59
CTPS1-202ENST00000372621 YTHDC1Q96MU7 727 aaKnown RBP18.73■□□□□ 0.59
CTPS1-202ENST00000372621 CC2D2AQ9P2K1 1620 aa18.69■□□□□ 0.58
CTPS1-202ENST00000372621 LRRC9Q6ZRR7 1453 aa18.67■□□□□ 0.58
CTPS1-202ENST00000372621 CFAP43Q8NDM7 1665 aa18.66■□□□□ 0.58
CTPS1-202ENST00000372621 FANCD2Q9BXW9 1451 aa18.65■□□□□ 0.58
CTPS1-202ENST00000372621 MAPKBP1O60336 1514 aa18.63■□□□□ 0.57
CTPS1-202ENST00000372621 DNMBPQ6XZF7 1577 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms