RNA–Protein interactions for RNA: ENST00000431918.1

CLDN4-202, Transcript of claudin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLDN4, Length 4,108 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-202ENST00000431918 NISCHQ9Y2I1 1504 aa22.86■■□□□ 1.25
CLDN4-202ENST00000431918 DCAF8L2P0C7V8 631 aa20.48■□□□□ 0.87
CLDN4-202ENST00000431918 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
CLDN4-202ENST00000431918 SUPT5HO00267 1087 aaKnown RBP20■□□□□ 0.79
CLDN4-202ENST00000431918 ZCCHC6Q5VYS8 1495 aaKnown RBP19.17■□□□□ 0.66
CLDN4-202ENST00000431918 CCDC180Q9P1Z9 1646 aa19.16■□□□□ 0.66
CLDN4-202ENST00000431918 ABCC9O60706 1549 aa18.82■□□□□ 0.6
CLDN4-202ENST00000431918 CHIC1Q5VXU3 224 aa18.79■□□□□ 0.6
CLDN4-202ENST00000431918 EHMT2Q96KQ7 1210 aa18.76■□□□□ 0.59
CLDN4-202ENST00000431918 FAM9AQ8IZU1 332 aaPredicted RBP18.64■□□□□ 0.57
CLDN4-202ENST00000431918 SCRIBQ14160 1630 aa18.52■□□□□ 0.56
CLDN4-202ENST00000431918 LOC105371045A0A1W2PR82 267 aa18.5■□□□□ 0.55
CLDN4-202ENST00000431918 TRIM41Q8WV44 630 aa18.5■□□□□ 0.55
CLDN4-202ENST00000431918 PCGF6Q9BYE7 350 aa18.47■□□□□ 0.55
CLDN4-202ENST00000431918 DCAF1Q9Y4B6 1507 aa18.4■□□□□ 0.54
CLDN4-202ENST00000431918 MYO15BQ96JP2 1530 aa18.28■□□□□ 0.52
CLDN4-202ENST00000431918 PABPN1Q86U42 306 aaKnown RBP eCLIP18.25■□□□□ 0.51
CLDN4-202ENST00000431918 RSF1Q96T23 1441 aaPredicted RBP18.16■□□□□ 0.5
CLDN4-202ENST00000431918 TTBK1Q5TCY1 1321 aaPredicted RBP18.06■□□□□ 0.48
CLDN4-202ENST00000431918 NACADO15069 1562 aa18.06■□□□□ 0.48
CLDN4-202ENST00000431918 PPARGC1BQ86YN6 1023 aaKnown RBP18.04■□□□□ 0.48
CLDN4-202ENST00000431918 CECR2Q9BXF3 1484 aa18.03■□□□□ 0.48
CLDN4-202ENST00000431918 RB1CC1Q8TDY2 1594 aa17.94■□□□□ 0.46
CLDN4-202ENST00000431918 HRCP23327 699 aa17.94■□□□□ 0.46
CLDN4-202ENST00000431918 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
CLDN4-202ENST00000431918 TRIM26Q12899 539 aaPredicted RBP17.89■□□□□ 0.45
CLDN4-202ENST00000431918 RANGAP1P46060 587 aaPredicted RBP17.87■□□□□ 0.45
CLDN4-202ENST00000431918 UBTFP17480 764 aaKnown RBP17.86■□□□□ 0.45
CLDN4-202ENST00000431918 MROH2BQ7Z745 1585 aa17.84■□□□□ 0.45
CLDN4-202ENST00000431918 WIZO95785 1651 aa17.68■□□□□ 0.42
CLDN4-202ENST00000431918 BAZ1AQ9NRL2 1556 aaPredicted RBP17.64■□□□□ 0.41
CLDN4-202ENST00000431918 APLP2Q06481 763 aa17.59■□□□□ 0.41
CLDN4-202ENST00000431918 CCER1Q8TC90 406 aaPredicted RBP17.56■□□□□ 0.4
CLDN4-202ENST00000431918 ZEB1P37275 1124 aaPredicted RBP17.49■□□□□ 0.39
CLDN4-202ENST00000431918 CSRNP3Q8WYN3 585 aa17.49■□□□□ 0.39
CLDN4-202ENST00000431918 CCDC88BA6NC98 1476 aa17.46■□□□□ 0.39
CLDN4-202ENST00000431918 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.45■□□□□ 0.38
CLDN4-202ENST00000431918 MYT1Q01538 1121 aa17.45■□□□□ 0.38
CLDN4-202ENST00000431918 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
CLDN4-202ENST00000431918 SMARCA4P51532 1647 aa17.38■□□□□ 0.37
CLDN4-202ENST00000431918 TOP2AP11388 1531 aaKnown RBP17.35■□□□□ 0.37
CLDN4-202ENST00000431918 HNRNPUL2Q1KMD3 747 aaKnown RBP17.33■□□□□ 0.36
CLDN4-202ENST00000431918 BAZ1BQ9UIG0 1483 aaKnown RBP17.32■□□□□ 0.36
CLDN4-202ENST00000431918 SOGA1O94964 1423 aa17.32■□□□□ 0.36
CLDN4-202ENST00000431918 ATP1B4Q9UN42 357 aaPredicted RBP17.29■□□□□ 0.36
CLDN4-202ENST00000431918 WRNQ14191 1432 aaPredicted RBP eCLIP17.28■□□□□ 0.36
CLDN4-202ENST00000431918 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
CLDN4-202ENST00000431918 CEP162Q5TB80 1403 aa17.2■□□□□ 0.34
CLDN4-202ENST00000431918 ATAD2BQ9ULI0 1458 aa17.16■□□□□ 0.34
CLDN4-202ENST00000431918 RUSC2Q8N2Y8 1516 aa17.15■□□□□ 0.34
CLDN4-202ENST00000431918 ITGAEP38570 1179 aa17.15■□□□□ 0.34
CLDN4-202ENST00000431918 UNC13AQ9UPW8 1703 aa17.14■□□□□ 0.33
CLDN4-202ENST00000431918 BICRAQ9NZM4 1560 aa17.12■□□□□ 0.33
CLDN4-202ENST00000431918 EEA1Q15075 1411 aa17.09■□□□□ 0.33
CLDN4-202ENST00000431918 TNIKQ9UKE5 1360 aa17.09■□□□□ 0.33
CLDN4-202ENST00000431918 GOLGA3Q08378 1498 aa17.08■□□□□ 0.32
CLDN4-202ENST00000431918 CLIP1P30622 1438 aa17.04■□□□□ 0.32
CLDN4-202ENST00000431918 P3H3Q8IVL6 736 aa17■□□□□ 0.31
CLDN4-202ENST00000431918 CEP164Q9UPV0 1460 aa16.97■□□□□ 0.31
CLDN4-202ENST00000431918 DIEXFQ68CQ4 756 aaKnown RBP16.89■□□□□ 0.29
CLDN4-202ENST00000431918 YTHDC1Q96MU7 727 aaKnown RBP16.88■□□□□ 0.29
CLDN4-202ENST00000431918 RAPGEF2Q9Y4G8 1499 aa16.85■□□□□ 0.29
CLDN4-202ENST00000431918 SYNJ1O43426 1573 aa16.85■□□□□ 0.29
CLDN4-202ENST00000431918 KIF27Q86VH2 1401 aa16.85■□□□□ 0.29
CLDN4-202ENST00000431918 EIF4G1Q04637 1599 aaKnown RBP16.83■□□□□ 0.29
CLDN4-202ENST00000431918 FAM50AQ14320 339 aaKnown RBP16.83■□□□□ 0.29
CLDN4-202ENST00000431918 NCAPD3P42695 1498 aa16.77■□□□□ 0.28
CLDN4-202ENST00000431918 CUX2O14529 1486 aa16.76■□□□□ 0.27
CLDN4-202ENST00000431918 CENPBP07199 599 aaPredicted RBP16.76■□□□□ 0.27
CLDN4-202ENST00000431918 SCAF1Q9H7N4 1312 aaKnown RBP16.74■□□□□ 0.27
CLDN4-202ENST00000431918 VPS8Q8N3P4 1428 aa16.74■□□□□ 0.27
CLDN4-202ENST00000431918 PEG3Q9GZU2 1588 aa16.73■□□□□ 0.27
CLDN4-202ENST00000431918 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
CLDN4-202ENST00000431918 KANK4Q5T7N3 995 aaPredicted RBP16.71■□□□□ 0.26
CLDN4-202ENST00000431918 ZNF316A6NFI3 1004 aaPredicted RBP16.7■□□□□ 0.26
CLDN4-202ENST00000431918 ARID3CA6NKF2 412 aa16.7■□□□□ 0.26
CLDN4-202ENST00000431918 CARMIL1Q5VZK9 1371 aa16.66■□□□□ 0.26
CLDN4-202ENST00000431918 NEUROD1Q13562 356 aa16.64■□□□□ 0.25
CLDN4-202ENST00000431918 CFTRP13569 1480 aa16.6■□□□□ 0.25
CLDN4-202ENST00000431918 HMGXB3Q12766 1538 aa16.59■□□□□ 0.25
CLDN4-202ENST00000431918 CUX1P39880 1505 aa16.58■□□□□ 0.25
CLDN4-202ENST00000431918 TOP2BQ02880 1626 aa16.58■□□□□ 0.24
CLDN4-202ENST00000431918 FBLN2P98095 1184 aa16.58■□□□□ 0.24
CLDN4-202ENST00000431918 KIF21BO75037 1637 aa16.56■□□□□ 0.24
CLDN4-202ENST00000431918 FANCD2Q9BXW9 1451 aa16.54■□□□□ 0.24
CLDN4-202ENST00000431918 TDRD9Q8NDG6 1382 aaKnown RBP16.53■□□□□ 0.24
CLDN4-202ENST00000431918 FGD5Q6ZNL6 1462 aa16.53■□□□□ 0.24
CLDN4-202ENST00000431918 IGF1RP08069 1367 aa16.52■□□□□ 0.24
CLDN4-202ENST00000431918 CC2D2AQ9P2K1 1620 aa16.51■□□□□ 0.23
CLDN4-202ENST00000431918 DNAJC5BQ9UF47 199 aa16.5■□□□□ 0.23
CLDN4-202ENST00000431918 NESP48681 1621 aa16.49■□□□□ 0.23
CLDN4-202ENST00000431918 RAD54L2Q9Y4B4 1467 aa16.49■□□□□ 0.23
CLDN4-202ENST00000431918 PRXQ9BXM0 1461 aa16.47■□□□□ 0.23
CLDN4-202ENST00000431918 CCNB3Q8WWL7 1395 aa16.45■□□□□ 0.22
CLDN4-202ENST00000431918 ARAP1Q96P48 1450 aa16.44■□□□□ 0.22
CLDN4-202ENST00000431918 ACIN1Q9UKV3 1341 aaKnown RBP16.44■□□□□ 0.22
CLDN4-202ENST00000431918 MIER1Q8N108 512 aa16.43■□□□□ 0.22
CLDN4-202ENST00000431918 TRIM52Q96A61 297 aa16.43■□□□□ 0.22
CLDN4-202ENST00000431918 MTUS2Q5JR59 1369 aa16.43■□□□□ 0.22
CLDN4-202ENST00000431918 GTF3C3Q9Y5Q9 886 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms