RNA–Protein interactions for RNA: ENST00000435050.1

CLDN4-203, Transcript of claudin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLDN4, Length 4,163 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-203ENST00000435050 NISCHQ9Y2I1 1504 aa24.82■■□□□ 1.56
CLDN4-203ENST00000435050 DCAF8L2P0C7V8 631 aa22.17■■□□□ 1.14
CLDN4-203ENST00000435050 SHROOM4Q9ULL8 1493 aa21.89■■□□□ 1.09
CLDN4-203ENST00000435050 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
CLDN4-203ENST00000435050 CCDC180Q9P1Z9 1646 aa20.87■□□□□ 0.93
CLDN4-203ENST00000435050 ZCCHC6Q5VYS8 1495 aaKnown RBP20.79■□□□□ 0.92
CLDN4-203ENST00000435050 ABCC9O60706 1549 aa20.57■□□□□ 0.88
CLDN4-203ENST00000435050 CHIC1Q5VXU3 224 aa20.15■□□□□ 0.82
CLDN4-203ENST00000435050 EHMT2Q96KQ7 1210 aa20.14■□□□□ 0.82
CLDN4-203ENST00000435050 SCRIBQ14160 1630 aa20.12■□□□□ 0.81
CLDN4-203ENST00000435050 FAM9AQ8IZU1 332 aaPredicted RBP20.02■□□□□ 0.8
CLDN4-203ENST00000435050 DCAF1Q9Y4B6 1507 aa19.99■□□□□ 0.79
CLDN4-203ENST00000435050 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLDN4-203ENST00000435050 TRIM41Q8WV44 630 aa19.87■□□□□ 0.77
CLDN4-203ENST00000435050 LOC105371045A0A1W2PR82 267 aa19.82■□□□□ 0.76
CLDN4-203ENST00000435050 NACADO15069 1562 aa19.68■□□□□ 0.74
CLDN4-203ENST00000435050 RSF1Q96T23 1441 aaPredicted RBP19.66■□□□□ 0.74
CLDN4-203ENST00000435050 PCGF6Q9BYE7 350 aa19.64■□□□□ 0.73
CLDN4-203ENST00000435050 MYO15BQ96JP2 1530 aa19.6■□□□□ 0.73
CLDN4-203ENST00000435050 CECR2Q9BXF3 1484 aa19.58■□□□□ 0.72
CLDN4-203ENST00000435050 RB1CC1Q8TDY2 1594 aa19.58■□□□□ 0.72
CLDN4-203ENST00000435050 MROH2BQ7Z745 1585 aa19.36■□□□□ 0.69
CLDN4-203ENST00000435050 TTBK1Q5TCY1 1321 aaPredicted RBP19.35■□□□□ 0.69
CLDN4-203ENST00000435050 PPARGC1BQ86YN6 1023 aaKnown RBP19.33■□□□□ 0.68
CLDN4-203ENST00000435050 RANGAP1P46060 587 aaPredicted RBP19.24■□□□□ 0.67
CLDN4-203ENST00000435050 UBTFP17480 764 aaKnown RBP19.19■□□□□ 0.66
CLDN4-203ENST00000435050 WIZO95785 1651 aa19.18■□□□□ 0.66
CLDN4-203ENST00000435050 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
CLDN4-203ENST00000435050 TRIM26Q12899 539 aaPredicted RBP19.05■□□□□ 0.64
CLDN4-203ENST00000435050 HRCP23327 699 aa18.98■□□□□ 0.63
CLDN4-203ENST00000435050 CCDC88BA6NC98 1476 aa18.93■□□□□ 0.62
CLDN4-203ENST00000435050 SMARCA4P51532 1647 aa18.9■□□□□ 0.62
CLDN4-203ENST00000435050 APLP2Q06481 763 aa18.85■□□□□ 0.61
CLDN4-203ENST00000435050 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
CLDN4-203ENST00000435050 ABCC8Q09428 1581 aa18.84■□□□□ 0.61
CLDN4-203ENST00000435050 BAZ1BQ9UIG0 1483 aaKnown RBP18.83■□□□□ 0.6
CLDN4-203ENST00000435050 TOP2AP11388 1531 aaKnown RBP18.82■□□□□ 0.6
CLDN4-203ENST00000435050 UNC13AQ9UPW8 1703 aa18.72■□□□□ 0.59
CLDN4-203ENST00000435050 BICRAQ9NZM4 1560 aa18.72■□□□□ 0.59
CLDN4-203ENST00000435050 SOGA1O94964 1423 aa18.71■□□□□ 0.59
CLDN4-203ENST00000435050 CCER1Q8TC90 406 aaPredicted RBP18.71■□□□□ 0.58
CLDN4-203ENST00000435050 WRNQ14191 1432 aaPredicted RBP eCLIP18.69■□□□□ 0.58
CLDN4-203ENST00000435050 ATAD2BQ9ULI0 1458 aa18.69■□□□□ 0.58
CLDN4-203ENST00000435050 SMARCA2P51531 1590 aa18.67■□□□□ 0.58
CLDN4-203ENST00000435050 ATP1B4Q9UN42 357 aaPredicted RBP18.63■□□□□ 0.57
CLDN4-203ENST00000435050 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.62■□□□□ 0.57
CLDN4-203ENST00000435050 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
CLDN4-203ENST00000435050 ZEB1P37275 1124 aaPredicted RBP18.55■□□□□ 0.56
CLDN4-203ENST00000435050 RUSC2Q8N2Y8 1516 aa18.54■□□□□ 0.56
CLDN4-203ENST00000435050 CEP162Q5TB80 1403 aa18.49■□□□□ 0.55
CLDN4-203ENST00000435050 EEA1Q15075 1411 aa18.41■□□□□ 0.54
CLDN4-203ENST00000435050 ITGAEP38570 1179 aa18.4■□□□□ 0.54
CLDN4-203ENST00000435050 EIF4G1Q04637 1599 aaKnown RBP18.4■□□□□ 0.54
CLDN4-203ENST00000435050 GOLGA3Q08378 1498 aa18.39■□□□□ 0.54
CLDN4-203ENST00000435050 TNIKQ9UKE5 1360 aa18.39■□□□□ 0.53
CLDN4-203ENST00000435050 P3H3Q8IVL6 736 aa18.37■□□□□ 0.53
CLDN4-203ENST00000435050 CLIP1P30622 1438 aa18.34■□□□□ 0.53
CLDN4-203ENST00000435050 CEP164Q9UPV0 1460 aa18.3■□□□□ 0.52
CLDN4-203ENST00000435050 NCAPD3P42695 1498 aa18.29■□□□□ 0.52
CLDN4-203ENST00000435050 SYNJ1O43426 1573 aa18.25■□□□□ 0.51
CLDN4-203ENST00000435050 PEG3Q9GZU2 1588 aa18.22■□□□□ 0.51
CLDN4-203ENST00000435050 KIF27Q86VH2 1401 aa18.22■□□□□ 0.51
CLDN4-203ENST00000435050 RAPGEF2Q9Y4G8 1499 aa18.2■□□□□ 0.5
CLDN4-203ENST00000435050 CADPSQ9ULU8 1353 aa18.2■□□□□ 0.5
CLDN4-203ENST00000435050 CUX2O14529 1486 aa18.16■□□□□ 0.5
CLDN4-203ENST00000435050 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
CLDN4-203ENST00000435050 FAM50AQ14320 339 aaKnown RBP18.09■□□□□ 0.49
CLDN4-203ENST00000435050 HMGXB3Q12766 1538 aa18.09■□□□□ 0.49
CLDN4-203ENST00000435050 CC2D2AQ9P2K1 1620 aa18.07■□□□□ 0.48
CLDN4-203ENST00000435050 ARID3CA6NKF2 412 aa18.07■□□□□ 0.48
CLDN4-203ENST00000435050 CFTRP13569 1480 aa18.06■□□□□ 0.48
CLDN4-203ENST00000435050 CARMIL1Q5VZK9 1371 aa18.03■□□□□ 0.48
CLDN4-203ENST00000435050 FBLN2P98095 1184 aa18.01■□□□□ 0.47
CLDN4-203ENST00000435050 VPS8Q8N3P4 1428 aa18.01■□□□□ 0.47
CLDN4-203ENST00000435050 CUX1P39880 1505 aa18.01■□□□□ 0.47
CLDN4-203ENST00000435050 FANCD2Q9BXW9 1451 aa18.01■□□□□ 0.47
CLDN4-203ENST00000435050 NESP48681 1621 aa18■□□□□ 0.47
CLDN4-203ENST00000435050 KANK4Q5T7N3 995 aaPredicted RBP17.99■□□□□ 0.47
CLDN4-203ENST00000435050 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
CLDN4-203ENST00000435050 TDRD9Q8NDG6 1382 aaKnown RBP17.97■□□□□ 0.47
CLDN4-203ENST00000435050 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
CLDN4-203ENST00000435050 RAD54L2Q9Y4B4 1467 aa17.92■□□□□ 0.46
CLDN4-203ENST00000435050 DIEXFQ68CQ4 756 aaKnown RBP17.91■□□□□ 0.46
CLDN4-203ENST00000435050 IGF1RP08069 1367 aa17.91■□□□□ 0.46
CLDN4-203ENST00000435050 YTHDC1Q96MU7 727 aaKnown RBP17.9■□□□□ 0.46
CLDN4-203ENST00000435050 KIF21BO75037 1637 aa17.87■□□□□ 0.45
CLDN4-203ENST00000435050 PDS5BQ9NTI5 1447 aa17.84■□□□□ 0.45
CLDN4-203ENST00000435050 PRXQ9BXM0 1461 aa17.82■□□□□ 0.44
CLDN4-203ENST00000435050 NEUROD1Q13562 356 aa17.82■□□□□ 0.44
CLDN4-203ENST00000435050 ZNF316A6NFI3 1004 aaPredicted RBP17.76■□□□□ 0.43
CLDN4-203ENST00000435050 ARAP1Q96P48 1450 aa17.75■□□□□ 0.43
CLDN4-203ENST00000435050 FHOD3Q2V2M9 1422 aa17.74■□□□□ 0.43
CLDN4-203ENST00000435050 BIVM-ERCC5R4GMW8 1640 aa17.74■□□□□ 0.43
CLDN4-203ENST00000435050 MTUS2Q5JR59 1369 aa17.72■□□□□ 0.43
CLDN4-203ENST00000435050 TOPBP1Q92547 1522 aa17.71■□□□□ 0.43
CLDN4-203ENST00000435050 ERCC6Q03468 1493 aa17.71■□□□□ 0.43
CLDN4-203ENST00000435050 POLA1P09884 1462 aaPredicted RBP17.71■□□□□ 0.43
CLDN4-203ENST00000435050 ERICH3Q5RHP9 1530 aa17.7■□□□□ 0.42
CLDN4-203ENST00000435050 CHMP7Q8WUX9 453 aaPredicted RBP17.7■□□□□ 0.42
CLDN4-203ENST00000435050 CCNB3Q8WWL7 1395 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms