Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFC3P40938 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFC3P40938 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFC3P40938 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFC3P40938 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.33■□□□□ 0.69
RFC3P40938 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
RFC3P40938 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.33■□□□□ 0.69
RFC3P40938 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFC3P40938 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
RFC3P40938 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFC3P40938 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.33■□□□□ 0.69
RFC3P40938 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFC3P40938 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.33■□□□□ 0.68
RFC3P40938 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFC3P40938 AL355802.2-201ENST00000402069 882 ntBASIC19.33■□□□□ 0.68
RFC3P40938 SLC7A5P2-201ENST00000553010 536 ntBASIC19.33■□□□□ 0.68
RFC3P40938 AL109923.1-201ENST00000618799 583 ntBASIC19.33■□□□□ 0.68
RFC3P40938 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFC3P40938 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.33■□□□□ 0.68
RFC3P40938 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RFC3P40938 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFC3P40938 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
RFC3P40938 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.32■□□□□ 0.68
RFC3P40938 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
RFC3P40938 EEF1DP3-203ENST00000566025 782 ntBASIC19.32■□□□□ 0.68
RFC3P40938 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RFC3P40938 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RFC3P40938 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.31■□□□□ 0.68
RFC3P40938 AC007322.1-201ENST00000426983 750 ntBASIC19.31■□□□□ 0.68
RFC3P40938 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.31■□□□□ 0.68
RFC3P40938 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
RFC3P40938 AL050303.2-201ENST00000619798 666 ntBASIC19.31■□□□□ 0.68
RFC3P40938 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RFC3P40938 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC3P40938 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.31■□□□□ 0.68
RFC3P40938 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.3■□□□□ 0.68
RFC3P40938 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 NCF1B-203ENST00000435988 1254 ntBASIC19.3■□□□□ 0.68
RFC3P40938 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RFC3P40938 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.3■□□□□ 0.68
RFC3P40938 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.3■□□□□ 0.68
RFC3P40938 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.3■□□□□ 0.68
RFC3P40938 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC3P40938 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.29■□□□□ 0.68
RFC3P40938 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.29■□□□□ 0.68
RFC3P40938 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.29■□□□□ 0.68
RFC3P40938 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.29■□□□□ 0.68
RFC3P40938 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.29■□□□□ 0.68
RFC3P40938 AC053503.5-201ENST00000601508 636 ntBASIC19.29■□□□□ 0.68
RFC3P40938 AC005181.1-201ENST00000604782 1256 ntBASIC19.29■□□□□ 0.68
RFC3P40938 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.29■□□□□ 0.68
RFC3P40938 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.29■□□□□ 0.68
RFC3P40938 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RFC3P40938 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC3P40938 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.28■□□□□ 0.68
RFC3P40938 AC026471.6-201ENST00000622954 1905 ntBASIC19.28■□□□□ 0.68
RFC3P40938 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 GPX1P1-201ENST00000388829 606 ntBASIC19.28■□□□□ 0.68
RFC3P40938 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.28■□□□□ 0.68
RFC3P40938 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.28■□□□□ 0.68
RFC3P40938 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 AC010536.3-201ENST00000620306 533 ntBASIC19.28■□□□□ 0.68
RFC3P40938 AC231657.2-201ENST00000624556 255 ntBASIC19.28■□□□□ 0.68
RFC3P40938 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms