Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP1O15259 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP1O15259 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP1O15259 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP1O15259 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP1O15259 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
NPHP1O15259 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 RHEB-204ENST00000472642 900 ntTSL 3 BASIC26.65■■□□□ 1.86
NPHP1O15259 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP1O15259 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP1O15259 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC26.65■■□□□ 1.86
NPHP1O15259 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC26.65■■□□□ 1.86
NPHP1O15259 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
NPHP1O15259 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP1O15259 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
NPHP1O15259 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
NPHP1O15259 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
NPHP1O15259 ESRRAP1-201ENST00000400596 1257 ntBASIC26.64■■□□□ 1.86
NPHP1O15259 POU5F1P4-201ENST00000413175 1085 ntBASIC26.64■■□□□ 1.86
NPHP1O15259 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC26.64■■□□□ 1.86
NPHP1O15259 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
NPHP1O15259 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC26.64■■□□□ 1.86
NPHP1O15259 AP006294.2-201ENST00000641667 209 ntBASIC26.64■■□□□ 1.86
NPHP1O15259 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.64■■□□□ 1.86
NPHP1O15259 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
NPHP1O15259 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
NPHP1O15259 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
NPHP1O15259 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP1O15259 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP1O15259 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC26.63■■□□□ 1.85
NPHP1O15259 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP1O15259 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC26.63■■□□□ 1.85
NPHP1O15259 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP1O15259 RPS2P52-201ENST00000469610 820 ntBASIC26.63■■□□□ 1.85
NPHP1O15259 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC26.63■■□□□ 1.85
NPHP1O15259 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC26.63■■□□□ 1.85
NPHP1O15259 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC26.63■■□□□ 1.85
NPHP1O15259 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.63■■□□□ 1.85
NPHP1O15259 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC26.63■■□□□ 1.85
NPHP1O15259 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP1O15259 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
NPHP1O15259 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP1O15259 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP1O15259 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NPHP1O15259 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
NPHP1O15259 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
NPHP1O15259 DUSP5P2-201ENST00000426873 1033 ntBASIC26.62■■□□□ 1.85
NPHP1O15259 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NPHP1O15259 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC26.62■■□□□ 1.85
NPHP1O15259 BET1L-207ENST00000529614 560 ntTSL 5 BASIC26.62■■□□□ 1.85
NPHP1O15259 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
NPHP1O15259 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC26.62■■□□□ 1.85
NPHP1O15259 AC083880.1-201ENST00000608266 535 ntBASIC26.62■■□□□ 1.85
NPHP1O15259 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
NPHP1O15259 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NPHP1O15259 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
NPHP1O15259 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.62■■□□□ 1.85
NPHP1O15259 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.62■■□□□ 1.85
NPHP1O15259 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC26.61■■□□□ 1.85
NPHP1O15259 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
NPHP1O15259 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
NPHP1O15259 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC26.61■■□□□ 1.85
NPHP1O15259 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
NPHP1O15259 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
NPHP1O15259 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
NPHP1O15259 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.61■■□□□ 1.85
NPHP1O15259 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC26.6■■□□□ 1.85
NPHP1O15259 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC26.6■■□□□ 1.85
NPHP1O15259 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC26.6■■□□□ 1.85
NPHP1O15259 AL591742.1-201ENST00000604433 565 ntBASIC26.6■■□□□ 1.85
NPHP1O15259 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
NPHP1O15259 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP1O15259 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP1O15259 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC26.59■■□□□ 1.85
NPHP1O15259 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
NPHP1O15259 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.59■■□□□ 1.85
NPHP1O15259 RNF146-206ENST00000480444 843 ntTSL 2 BASIC26.59■■□□□ 1.85
NPHP1O15259 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms