Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SLC28A1O00337 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SLC28A1O00337 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SLC28A1O00337 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.34■□□□□ 0.85
SLC28A1O00337 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC28A1O00337 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.33■□□□□ 0.85
SLC28A1O00337 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
SLC28A1O00337 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.33■□□□□ 0.85
SLC28A1O00337 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.33■□□□□ 0.85
SLC28A1O00337 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC28A1O00337 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC28A1O00337 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC28A1O00337 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC28A1O00337 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.33■□□□□ 0.84
SLC28A1O00337 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC28A1O00337 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SLC28A1O00337 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SLC28A1O00337 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SLC28A1O00337 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC28A1O00337 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC28A1O00337 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC28A1O00337 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SLC28A1O00337 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC28A1O00337 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SLC28A1O00337 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
SLC28A1O00337 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC28A1O00337 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SLC28A1O00337 AC009237.3-201ENST00000393279 1427 ntBASIC20.32■□□□□ 0.84
SLC28A1O00337 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC28A1O00337 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SLC28A1O00337 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
SLC28A1O00337 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SLC28A1O00337 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC28A1O00337 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC28A1O00337 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC28A1O00337 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SLC28A1O00337 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.31■□□□□ 0.84
SLC28A1O00337 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.31■□□□□ 0.84
SLC28A1O00337 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 AC131212.1-201ENST00000613771 668 ntBASIC20.31■□□□□ 0.84
SLC28A1O00337 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC28A1O00337 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SLC28A1O00337 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.31■□□□□ 0.84
SLC28A1O00337 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.31■□□□□ 0.84
SLC28A1O00337 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SLC28A1O00337 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC28A1O00337 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC28A1O00337 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC28A1O00337 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC28A1O00337 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC28A1O00337 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC28A1O00337 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC28A1O00337 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC28A1O00337 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC28A1O00337 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.29■□□□□ 0.84
SLC28A1O00337 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.29■□□□□ 0.84
SLC28A1O00337 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.29■□□□□ 0.84
SLC28A1O00337 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 AC008764.7-201ENST00000593779 1081 ntBASIC20.29■□□□□ 0.84
SLC28A1O00337 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SLC28A1O00337 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.29■□□□□ 0.84
SLC28A1O00337 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.29■□□□□ 0.84
SLC28A1O00337 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC28A1O00337 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms