Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ADH5-210ENST00000512621 1475 ntTSL 213.33□□□□□ -0.282e-6■■■□□ 17
SF3B1O75533 ZNF131-220ENST00000515326 1050 ntTSL 1 (best)13.02□□□□□ -0.332e-6■■■□□ 17
SF3B1O75533 ZNF131-216ENST00000510026 2599 ntTSL 512.17□□□□□ -0.462e-6■■■□□ 17
SF3B1O75533 ZC3H7A-212ENST00000575041 780 ntTSL 512.04□□□□□ -0.482e-6■■■□□ 17
SF3B1O75533 ZNF131-212ENST00000509156 2063 ntTSL 2 BASIC11.83□□□□□ -0.522e-6■■■□□ 17
SF3B1O75533 ADH5-211ENST00000512659 822 ntTSL 511.76□□□□□ -0.532e-6■■■□□ 17
SF3B1O75533 ZC3H7A-207ENST00000571676 859 ntTSL 210.45□□□□□ -0.742e-6■■■□□ 17
SF3B1O75533 ZC3H7A-217ENST00000576247 480 ntTSL 210.45□□□□□ -0.742e-6■■■□□ 17
SF3B1O75533 ADH5-201ENST00000296412 2615 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.912e-6■■■□□ 17
SF3B1O75533 ZNF131-207ENST00000507218 1352 ntTSL 1 (best)8.79□□□□□ -12e-6■■■□□ 17
SF3B1O75533 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC7.35□□□□□ -1.232e-6■■■□□ 17
SF3B1O75533 ZC3H7A-215ENST00000576009 986 ntTSL 36.38□□□□□ -1.392e-6■■■□□ 17
SF3B1O75533 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.582e-6■■■□□ 17
SF3B1O75533 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.692e-6■■■□□ 17
SF3B1O75533 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.61□□□□□ -1.832e-6■■■□□ 17
SF3B1O75533 KIF5B-202ENST00000493889 494 ntTSL 23.35□□□□□ -1.872e-6■■■□□ 17
SF3B1O75533 SRRM2-213ENST00000573311 732 ntTSL 216.27■□□□□ 0.22e-12■■■□□ 17
SF3B1O75533 GABRE-202ENST00000417300 619 ntTSL 212.5□□□□□ -0.412e-6■■■□□ 17
SF3B1O75533 GABRE-203ENST00000441219 1324 ntTSL 29.89□□□□□ -0.832e-6■■■□□ 17
SF3B1O75533 SREK1-215ENST00000524111 4074 ntTSL 58.76□□□□□ -1.011e-6■■■□□ 17
SF3B1O75533 HBS1L-214ENST00000529641 881 ntTSL 58.81□□□□□ -13e-6■■■□□ 17
SF3B1O75533 HYOU1-204ENST00000527738 809 ntTSL 28.77□□□□□ -1.014e-10■■■□□ 16.9
SF3B1O75533 LDHB-206ENST00000470985 678 ntTSL 1 (best)7.58□□□□□ -1.23e-7■■■□□ 16.8
SF3B1O75533 LDHB-209ENST00000542765 672 ntTSL 22.54□□□□□ -23e-7■■■□□ 16.8
SF3B1O75533 CALCOCO2-209ENST00000507076 767 ntTSL 325.51■■□□□ 1.673e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.1■□□□□ 0.173e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-225ENST00000570513 553 ntTSL 412.29□□□□□ -0.443e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-228ENST00000576582 575 ntTSL 511.88□□□□□ -0.513e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-206ENST00000503463 750 ntTSL 211.73□□□□□ -0.533e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-214ENST00000509415 558 ntTSL 411.73□□□□□ -0.533e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-227ENST00000575560 540 ntTSL 511.08□□□□□ -0.643e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-203ENST00000416445 1438 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.723e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-205ENST00000502761 724 ntTSL 29.87□□□□□ -0.833e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-215ENST00000509507 1512 ntTSL 2 BASIC9.25□□□□□ -0.933e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-201ENST00000258947 3682 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.973e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-221ENST00000513119 973 ntTSL 58.23□□□□□ -1.093e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.39□□□□□ -1.393e-6■■■□□ 16.8
SF3B1O75533 CALCOCO2-207ENST00000505071 495 ntTSL 55.39□□□□□ -1.553e-6■■■□□ 16.8
SF3B1O75533 MATR3-239ENST00000514694 587 ntTSL 416.7■□□□□ 0.266e-7■■■□□ 16.8
SF3B1O75533 MATR3-234ENST00000505016 664 ntTSL 213.47□□□□□ -0.256e-7■■■□□ 16.8
SF3B1O75533 MATR3-231ENST00000502394 589 ntTSL 412.89□□□□□ -0.356e-7■■■□□ 16.8
SF3B1O75533 HDGF-207ENST00000477306 686 ntTSL 216.02■□□□□ 0.164e-7■■■□□ 16.8
SF3B1O75533 NUP58-214ENST00000495460 947 ntTSL 516.65■□□□□ 0.264e-7■■■□□ 16.7
SF3B1O75533 MATR3-221ENST00000513121 573 ntTSL 220.95■□□□□ 0.946e-7■■■□□ 16.7
SF3B1O75533 MATR3-212ENST00000507860 571 ntTSL 44.88□□□□□ -1.636e-7■■■□□ 16.7
SF3B1O75533 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.39■□□□□ 0.051e-8■■■□□ 16.7
SF3B1O75533 PAPOLA-204ENST00000553461 892 ntTSL 23.81□□□□□ -1.81e-8■■■□□ 16.7
SF3B1O75533 PAPOLA-213ENST00000555224 534 ntTSL 53.65□□□□□ -1.831e-8■■■□□ 16.7
SF3B1O75533 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.18■□□□□ 0.664e-6■■■□□ 16.7
SF3B1O75533 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.624e-6■■■□□ 16.7
SF3B1O75533 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.55■□□□□ 0.564e-6■■■□□ 16.7
SF3B1O75533 MYL6-216ENST00000550184 1564 ntTSL 515.93■□□□□ 0.144e-6■■■□□ 16.7
SF3B1O75533 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.124e-6■■■□□ 16.7
SF3B1O75533 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.064e-6■■■□□ 16.7
SF3B1O75533 MYL6-210ENST00000548400 573 ntTSL 3 BASIC13.96□□□□□ -0.174e-6■■■□□ 16.7
SF3B1O75533 MYL6-215ENST00000549566 685 ntTSL 2 BASIC13.94□□□□□ -0.184e-6■■■□□ 16.7
SF3B1O75533 MYL6-212ENST00000548725 582 ntTSL 213.54□□□□□ -0.244e-6■■■□□ 16.7
SF3B1O75533 MYL6-208ENST00000547703 675 ntTSL 513.48□□□□□ -0.254e-6■■■□□ 16.7
SF3B1O75533 MYL6-206ENST00000547408 683 ntTSL 3 BASIC10.3□□□□□ -0.764e-6■■■□□ 16.7
SF3B1O75533 MYL6-217ENST00000550639 419 ntTSL 510.3□□□□□ -0.764e-6■■■□□ 16.7
SF3B1O75533 MYL6-214ENST00000549392 411 ntTSL 510.02□□□□□ -0.814e-6■■■□□ 16.7
SF3B1O75533 MYL6-207ENST00000547649 655 ntAPPRIS ALT1 TSL 1 (best) BASIC9.71□□□□□ -0.864e-6■■■□□ 16.7
SF3B1O75533 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC8.79□□□□□ -14e-6■■■□□ 16.7
SF3B1O75533 MYL6-211ENST00000548580 528 ntTSL 2 BASIC7.93□□□□□ -1.144e-6■■■□□ 16.7
SF3B1O75533 MYL6-221ENST00000552297 454 ntTSL 37.18□□□□□ -1.264e-6■■■□□ 16.7
SF3B1O75533 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.36□□□□□ -1.394e-6■■■□□ 16.7
SF3B1O75533 GTPBP2-206ENST00000452781 681 ntTSL 522.38■■□□□ 1.172e-6■■■□□ 16.6
SF3B1O75533 GTPBP2-205ENST00000442748 946 ntTSL 315.02■□□□□ -02e-6■■■□□ 16.6
SF3B1O75533 RPL41-206ENST00000552314 595 ntTSL 210.12□□□□□ -0.794e-11■■■□□ 16.6
SF3B1O75533 RPL41-205ENST00000546654 238 ntTSL 26.35□□□□□ -1.394e-11■■■□□ 16.6
SF3B1O75533 HNRNPH1-221ENST00000513230 248 ntTSL 324.35■■□□□ 1.491e-6■■■□□ 16.6
SF3B1O75533 HNRNPH1-242ENST00000522256 492 ntTSL 416.77■□□□□ 0.281e-6■■■□□ 16.6
SF3B1O75533 ZFR-202ENST00000502988 2184 ntTSL 1 (best)5.17□□□□□ -1.583e-6■■■□□ 16.6
SF3B1O75533 MARS-206ENST00000546971 711 ntTSL 218.23■□□□□ 0.512e-10■■■□□ 16.5
SF3B1O75533 MARS-212ENST00000548630 557 ntTSL 217.83■□□□□ 0.442e-10■■■□□ 16.5
SF3B1O75533 MARS-216ENST00000549048 755 ntTSL 317.18■□□□□ 0.342e-10■■■□□ 16.5
SF3B1O75533 RPL11-202ENST00000443624 994 ntTSL 28.43□□□□□ -1.062e-10■■■□□ 16.5
SF3B1O75533 HSP90AA1-203ENST00000553585 581 ntTSL 36.45□□□□□ -1.383e-8■■■□□ 16.5
SF3B1O75533 SFT2D1-205ENST00000488773 546 ntTSL 56.05□□□□□ -1.444e-7■■■□□ 16.5
SF3B1O75533 TFRC-209ENST00000464368 569 ntTSL 410.89□□□□□ -0.676e-7■■■□□ 16.4
SF3B1O75533 TFRC-210ENST00000465288 560 ntTSL 59.43□□□□□ -0.96e-7■■■□□ 16.4
SF3B1O75533 TFRC-212ENST00000477148 570 ntTSL 45.63□□□□□ -1.516e-7■■■□□ 16.4
SF3B1O75533 FASTK-216ENST00000496663 818 ntTSL 224.04■■□□□ 1.442e-6■■■□□ 16.4
SF3B1O75533 AES-210ENST00000590067 1100 ntTSL 218.54■□□□□ 0.568e-9■■■□□ 16.4
SF3B1O75533 AES-209ENST00000587393 1082 ntTSL 217.21■□□□□ 0.358e-9■■■□□ 16.4
SF3B1O75533 AES-212ENST00000592414 3274 ntTSL 212.53□□□□□ -0.48e-9■■■□□ 16.4
SF3B1O75533 EIF4G2-217ENST00000531180 557 ntTSL 41.31□□□□□ -2.25e-8■■■□□ 16.4
SF3B1O75533 EIF4G2-222ENST00000532120 223 ntTSL 31.07□□□□□ -2.245e-8■■■□□ 16.4
SF3B1O75533 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.117e-7■■■□□ 16.3
SF3B1O75533 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.197e-7■■■□□ 16.3
SF3B1O75533 SRSF5-215ENST00000556587 1863 ntTSL 1 (best)13.11□□□□□ -0.317e-7■■■□□ 16.3
SF3B1O75533 SRSF5-205ENST00000553635 1412 ntTSL 2 BASIC12.39□□□□□ -0.437e-7■■■□□ 16.3
SF3B1O75533 SRSF5-217ENST00000557154 1500 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.657e-7■■■□□ 16.3
SF3B1O75533 SRSF5-212ENST00000556184 2443 ntTSL 1 (best)10.96□□□□□ -0.667e-7■■■□□ 16.3
SF3B1O75533 SRSF5-211ENST00000555547 2057 ntTSL 58.98□□□□□ -0.977e-7■■■□□ 16.3
SF3B1O75533 SRSF5-207ENST00000554465 3044 ntTSL 1 (best)8.5□□□□□ -1.057e-7■■■□□ 16.3
SF3B1O75533 HMBOX1-209ENST00000522468 817 ntTSL 315.53■□□□□ 0.085e-8■■■□□ 16.3
SF3B1O75533 GTPBP2-210ENST00000496137 516 ntTSL 37.32□□□□□ -1.246e-14■■■□□ 16.3
SF3B1O75533 FUS-212ENST00000569760 639 ntTSL 225.73■■□□□ 1.713e-7■■■□□ 16.2
SF3B1O75533 FUS-204ENST00000483853 778 ntTSL 223.36■■□□□ 1.333e-7■■■□□ 16.2
Retrieved 100 of 46,956 protein–RNA pairs in 3478.8 ms