Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 AC055733.4-201ENST00000638462 1354 ntBASIC6.5□□□□□ -1.37
SYNE1Q8NF91 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 LINC01960-201ENST00000563759 1884 ntBASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SYNE1Q8NF91 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 AC066615.1-201ENST00000640911 628 ntBASIC6.49□□□□□ -1.37
SYNE1Q8NF91 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 MFF-207ENST00000409565 1548 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 COMT-203ENST00000403184 2217 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 AC231657.2-201ENST00000624556 255 ntBASIC6.49□□□□□ -1.37
SYNE1Q8NF91 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 UQCRFS1P1-201ENST00000435169 820 ntBASIC6.49□□□□□ -1.37
SYNE1Q8NF91 APTR-205ENST00000447009 902 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 AC087239.1-201ENST00000622671 572 ntBASIC6.49□□□□□ -1.37
SYNE1Q8NF91 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
SYNE1Q8NF91 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 MAZ-216ENST00000616501 991 ntTSL 5 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 AC007322.1-201ENST00000426983 750 ntBASIC6.48□□□□□ -1.37
SYNE1Q8NF91 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 AC009237.3-201ENST00000393279 1427 ntBASIC6.48□□□□□ -1.37
SYNE1Q8NF91 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 CD99P1-205ENST00000527459 561 ntBASIC6.48□□□□□ -1.37
SYNE1Q8NF91 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC6.48□□□□□ -1.37
SYNE1Q8NF91 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms