Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCD3Q6STE5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCD3Q6STE5 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SMARCD3Q6STE5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 AC073130.3-201ENST00000624389 2278 ntBASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 AC136469.2-201ENST00000623944 1028 ntBASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCD3Q6STE5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 AP005435.1-201ENST00000529293 1178 ntBASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 MIR4466-201ENST00000606121 54 ntBASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 AC011298.3-201ENST00000615796 283 ntBASIC19.27■□□□□ 0.68
SMARCD3Q6STE5 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCD3Q6STE5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCD3Q6STE5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 AP004607.7-201ENST00000527152 1677 ntBASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCD3Q6STE5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCD3Q6STE5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 SLC47A1P1-202ENST00000449666 945 ntBASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCD3Q6STE5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
SMARCD3Q6STE5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SMARCD3Q6STE5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.22■□□□□ 0.67
SMARCD3Q6STE5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCD3Q6STE5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCD3Q6STE5 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms